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Class schedule

Useful links

Lecture 1

Lecture 2

Lecture 3

Lecture 4

Lecture 5

Lecture 6

Lecture 7

Lecture 8

REVIEW 1

Lecture 9

Lecture 10

Lecture 11

Lecture 12

Lecture 13

Lecture 14

Lecture 15

Lecture 16

Lecture 17

 


PP703 - Agricultural Genomics: Principles and Applications

Instructors: Guo-Liang Wang and Eric Stockinger

Teaching assistant: Chan Ho Park

Useful links

NCBI sites

  • Entrez-PubMed Home
  • NCBI Taxonomy Server
  • NCBI Genomes Server
  • NCBI Genomes Entrez

    • Genomics Sites

  • Science Functional Genomics special issues
  • Science Functional Genomics links
  • Nature Omics Gateway
  • Nature Genomics Papers

    • Arabidopsis Sites

  • TAIR Arabidopsis Information Resource

    • Microbe Sites

  • APSnet feature- Genomics of Plant-Associated Bacteria

  • Meeting Report- Agricultural Microbes Genome II

    • Molecular databases

  • Basic BLAST search
  • Advanced BLAST search

  • SignalP v. 3.0
  • SignalP v. 2.0 b2
  • NetOGlyc v. 2.0
  • TMHMM (transmembrane helices)
  • PRED-TMR2 v. 1.0 (transmembrane domains)

    • Protein motif databases

  • BLOCKS Protein motif search
  • Modules Protein module database
  • SMART Protein module search
  • PRINTS Protein motif fingerprints database
  • Pfam Protein family database
  • ProDom Protein domain database
  • Links to protein family sites

    • Other databases

  • KEGG Metabolic pathways
  • ENZYME
  • Links to pathways and other databases

  • REBASE Restriction enzymes





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