BLASTX 2.2.5 [Nov-16-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1039753738-09696-29604

Query= 
         (336 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,247,039 sequences; 397,579,747 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17547522|ref|NP_520924.1|  HYPOTHETICAL PROTEIN [Ralstoni...    32   1.8   
gi|21758113|dbj|BAC05246.1|  unnamed protein product [Homo s...    31   4.1   
gi|23007889|gb|ZP_00049566.1|  hypothetical protein [Magneto...    30   9.2   
gi|23508014|ref|NP_700684.1|  hypothetical protein [Plasmodi...    30   9.2   

Alignments


>gi|17547522|ref|NP_520924.1|   HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
 gi|17429826|emb|CAD16510.1|   HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
          Length = 362

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = +2

Query: 104 QFAVPKFFFYYFGVRCASPSEACRLLERYL----QLAW 205
           Q+A+P   FY  G  C S ++AC +L R+     +LAW
Sbjct: 184 QYAIPDGMFYGGGATCWSTAQACAILSRHAADAPRLAW 221



>gi|21758113|dbj|BAC05246.1|   unnamed protein product [Homo sapiens]
          Length = 180

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 80  FNQTHVYSQFAVPKFFFYYF 139
           FNQ H+ SQF +  +F+YYF
Sbjct: 28  FNQAHLVSQFIILFYFYYYF 47



>gi|23007889|gb|ZP_00049566.1|   hypothetical protein [Magnetospirillum magnetotacticum]
          Length = 328

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 157 RSTSDTKIIKKKLRHCKL*IHMCLVKNH 74
           R+T DT++++K L  C+L +H+    NH
Sbjct: 182 RATPDTRLVEKALSGCELTVHIATKLNH 209



>gi|23508014|ref|NP_700684.1|   hypothetical protein [Plasmodium falciparum 3D7]
 gi|23495076|gb|AAN35408.1|AE014832_30   hypothetical protein [Plasmodium falciparum 3D7]
          Length = 4431

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +2

Query: 11   DLIYHLISHRREQKPCYTTDLVIFNQTHVYSQFAVPKFFFYYFGV 145
            D ++ + + + E+K      +V+FN    Y++F + K F+YY  +
Sbjct: 3939 DNVFLIFNKKYERKK-----VVVFNNIEEYNKFNITKLFYYYISI 3978






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Dec 9, 2002  8:40 PM
  Number of letters in database: 397,579,747
  Number of sequences in database:  1,247,039
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 232,322,093
Number of Sequences: 1247039
Number of extensions: 4074626
Number of successful extensions: 7856
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7855
length of database: 397,579,747
effective HSP length: 87
effective length of database: 289,087,354
effective search space used: 6938096496
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)