BLASTX 2.2.5 [Nov-16-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1039751421-020421-15556

Query= 
         (395 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,247,039 sequences; 397,579,747 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|3885888|gb|AAC78104.1|  high mobility group protein [Oryz...    41   0.004 
gi|7446229|pir||T03640  high mobility group protein MNB1b - ...    36   0.090 
gi|123378|sp|P27347|MNBB_MAIZE  DNA-BINDING PROTEIN MNB1B (H...    36   0.090 
gi|729738|sp|P40621|HMGL_WHEAT  HMG1/2-LIKE PROTEIN >gi|1007...    33   0.99  
gi|21291736|gb|EAA03881.1|  agCP2287 [Anopheles gambiae str....    32   1.3   
gi|93144|pir||B40505  hypothetical protein - suid herpesviru...    32   2.2   
gi|12382019|dbj|BAB21288.1|  P0410E03.19 [Oryza sativa (japo...    30   6.4   
gi|21392064|gb|AAM48386.1|  RE03056p [Drosophila melanogaster]     25   8.6   
gi|24653690|ref|NP_725409.1|  CG30480-PA [Drosophila melanog...    25   8.6   

Alignments


>gi|3885888|gb|AAC78104.1|   high mobility group protein [Oryza sativa]
 gi|23345287|gb|AAN28722.1|   HMG1 protein [Oryza sativa (indica cultivar-group)]
          Length = 157

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +3

Query: 3   NKAIAAYNKGESTAKKAPA 59
           NKAIAAYNKGESTAKKAPA
Sbjct: 104 NKAIAAYNKGESTAKKAPA 122



>gi|7446229|pir||T03640   high mobility group protein MNB1b - maize (fragment)
 gi|397396|emb|CAA46876.1|   DNA-binding protein [Zea mays]
          Length = 168

 Score = 36.2 bits (82), Expect = 0.090
 Identities = 19/20 (95%), Positives = 19/20 (95%), Gaps = 1/20 (5%)
 Frame = +3

Query: 3   NKAIAAYNKGEST-AKKAPA 59
           NKAIAAYNKGEST AKKAPA
Sbjct: 114 NKAIAAYNKGESTAAKKAPA 133



>gi|123378|sp|P27347|MNBB_MAIZE   DNA-BINDING PROTEIN MNB1B (HMG1-LIKE PROTEIN)
 gi|539062|pir||B47150   high mobility group protein MNB1b - maize
 gi|22329|emb|CAA41220.1|   high mobility group protein [Zea mays]
 gi|5441502|emb|CAB46752.1|   HMGa protein [Zea mays]
 gi|22347617|gb|AAM95942.1|   nucleosome/chromatin assembly factor group D protein [Zea mays]
          Length = 157

 Score = 36.2 bits (82), Expect = 0.090
 Identities = 19/20 (95%), Positives = 19/20 (95%), Gaps = 1/20 (5%)
 Frame = +3

Query: 3   NKAIAAYNKGEST-AKKAPA 59
           NKAIAAYNKGEST AKKAPA
Sbjct: 103 NKAIAAYNKGESTAAKKAPA 122



>gi|729738|sp|P40621|HMGL_WHEAT   HMG1/2-LIKE PROTEIN
 gi|100791|pir||S18991   high mobility group protein - wheat
 gi|21803|emb|CAA77641.1|   high mobility group protein [Triticum aestivum]
          Length = 161

 Score = 32.7 bits (73), Expect = 0.99
 Identities = 15/18 (83%), Positives = 15/18 (83%)
 Frame = +3

Query: 3   NKAIAAYNKGESTAKKAP 56
           NKAIAAYNKGES A  AP
Sbjct: 104 NKAIAAYNKGESAAAAAP 121



>gi|21291736|gb|EAA03881.1|   agCP2287 [Anopheles gambiae str. PEST]
          Length = 272

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +3

Query: 207 GGGRPKEPIHHHHHRLLELFSFTSH 281
           GGG P  P HHHHH    L    SH
Sbjct: 46  GGGNPSTPHHHHHHHHNHLSQPASH 70



>gi|93144|pir||B40505   hypothetical protein - suid herpesvirus 1 (strain Indiana-Funkhuser
           or Becker)
 gi|334068|gb|AAA47468.1|   ORF2
          Length = 1958

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 195 QDAKGGGRPKEPIHHHHHR 251
           QD  GGG P    HHHHH+
Sbjct: 350 QDPPGGGPPSAETHHHHHQ 368



>gi|12382019|dbj|BAB21288.1|   P0410E03.19 [Oryza sativa (japonica cultivar-group)]
          Length = 176

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 213 GRPKEPIHHHHHRLLELFSFTSHRDVL 293
           GRP  P HHHH    EL S  SH   +
Sbjct: 20  GRPTPPPHHHHDAGAELVSGDSHHSAV 46



>gi|21392064|gb|AAM48386.1|   RE03056p [Drosophila melanogaster]
          Length = 920

 Score = 25.4 bits (54), Expect(2) = 8.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 207 GGGRPKEPIHHHHHR 251
           G   PK   HHHHHR
Sbjct: 36  GSVAPKHRHHHHHHR 50




 Score = 22.7 bits (47), Expect(2) = 8.6
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 234 HHHHHRLLELFSFTSHRDVLL 296
           HHHHH   E     +  +V+L
Sbjct: 51  HHHHHERQENVEVVATEEVIL 71



>gi|24653690|ref|NP_725409.1|   CG30480-PA [Drosophila melanogaster]
 gi|21627178|gb|AAM68547.1|   CG30480-PA [Drosophila melanogaster]
          Length = 920

 Score = 25.4 bits (54), Expect(2) = 8.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 207 GGGRPKEPIHHHHHR 251
           G   PK   HHHHHR
Sbjct: 36  GSVAPKHRHHHHHHR 50




 Score = 22.7 bits (47), Expect(2) = 8.6
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 234 HHHHHRLLELFSFTSHRDVLL 296
           HHHHH   E     +  +V+L
Sbjct: 51  HHHHHERQENVEVVATEEVIL 71






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Dec 9, 2002  8:40 PM
  Number of letters in database: 397,579,747
  Number of sequences in database:  1,247,039
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 188,452,473
Number of Sequences: 1247039
Number of extensions: 2531736
Number of successful extensions: 12103
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 10645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11813
length of database: 397,579,747
effective HSP length: 107
effective length of database: 264,146,574
effective search space used: 6339517776
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)