BLASTX 2.2.5 [Nov-16-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1039751539-021432-20564

Query= 
         (444 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,247,039 sequences; 397,579,747 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|25553559|dbj|BAC24830.1|  OSJNBa0038F22.7 [Oryza sativa (...   133   5e-31 
gi|6983876|dbj|BAA90811.1|  ESTs AU064537(E31904),AU082147(E...   118   2e-26 
gi|18378887|ref|NP_563636.1|  expressed protein; protein id:...   103   3e-22 
gi|8489788|gb|AAF75750.1|AF261140_1  unknown [Lycopersicon e...   103   3e-22 
gi|15233030|ref|NP_191666.1|  putative protein; protein id: ...    97   4e-20 
gi|14335058|gb|AAK59793.1|  At2g45740/F4I18.28 [Arabidopsis ...    94   3e-19 
gi|18406877|ref|NP_566055.1|  expressed protein; protein id:...    94   3e-19 
gi|7486466|pir||T02473  hypothetical protein At2g45740 [impo...    87   4e-17 
gi|24644071|ref|NP_649494.1|  CG14655-PA [Drosophila melanog...    30   4.5   
gi|21225607|ref|NP_631386.1|  1,4-alpha-glucan branching enz...    30   5.9   
gi|421646|pir||S34218  1,4-alpha-glucan branching enzyme (EC...    30   5.9   
gi|20826363|ref|XP_144849.1|  similar to immunoglobulin ligh...    30   5.9   
gi|16081331|ref|NP_393652.1|  conserved hypothetical protein...    30   7.8   
gi|5174485|ref|NP_006030.1|  mannose receptor, C type 2; KIA...    30   7.8   
gi|4835878|gb|AAD30280.1|AF134838_1  endocytic receptor Endo...    30   7.8   

Alignments


>gi|25553559|dbj|BAC24830.1|   OSJNBa0038F22.7 [Oryza sativa (japonica cultivar-group)]
          Length = 422

 Score =  133 bits (334), Expect = 5e-31
 Identities = 72/93 (77%), Positives = 72/93 (77%)
 Frame = +3

Query: 3   EVAELQRXXXXXXXXXXXXXXXXXXXXXQYQMKLQKCNERRLALIKSSLDIVVAIGLLQL 182
           EVAELQR                     QYQMKLQKCNERRLALIKSSLDIVVAIGLLQL
Sbjct: 330 EVAELQRLSKSMKKLEKELKHQELLKNEQYQMKLQKCNERRLALIKSSLDIVVAIGLLQL 389

Query: 183 APKKVTPRVTGAFGFASSLIACYQLLPAPAKSK 281
           APKKVTPRVTGAFGFASSLIACYQLLPAPAKSK
Sbjct: 390 APKKVTPRVTGAFGFASSLIACYQLLPAPAKSK 422



>gi|6983876|dbj|BAA90811.1|   ESTs AU064537(E31904),AU082147(E31904) correspond to a region of
           the predicted gene.~Similar to Arabidopsis thaliana
           chromosome II BAC F4I18 genomic sequence; unknown
           protein. (AC004665) [Oryza sativa (japonica
           cultivar-group)]
          Length = 252

 Score =  118 bits (295), Expect = 2e-26
 Identities = 67/101 (66%), Positives = 68/101 (67%)
 Frame = +3

Query: 3   EVAELQRXXXXXXXXXXXXXXXXXXXXXQYQMKLQKCNERRLALIKSSLDIVVAIGLLQL 182
           EVAELQR                     QYQMKLQKCNERRLALIKSSLDIVVAIGLLQL
Sbjct: 141 EVAELQRLSKSMKKLEKELKHQELLKNEQYQMKLQKCNERRLALIKSSLDIVVAIGLLQL 200

Query: 183 APKKVTPRVTGAFGFASSLIACYQLLPAPAKSK*ST*RGVS 305
           APKKVTPRVTGAFGFASSLIACYQ    P  +      GVS
Sbjct: 201 APKKVTPRVTGAFGFASSLIACYQSCSQPQPNPSDPPEGVS 241




 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 28/28 (100%), Positives = 28/28 (100%)
 Frame = +1

Query: 253 SCSQPQPNPSDPPEGVSVGSSNVATSKK 336
           SCSQPQPNPSDPPEGVSVGSSNVATSKK
Sbjct: 225 SCSQPQPNPSDPPEGVSVGSSNVATSKK 252



>gi|18378887|ref|NP_563636.1|   expressed protein; protein id: At1g01820.1, supported by cDNA:
           28475., supported by cDNA: gi_12083289, supported by
           cDNA: gi_17381254, supported by cDNA: gi_20453366
           [Arabidopsis thaliana]
 gi|25511713|pir||A86150   T1N6.24 protein - Arabidopsis thaliana
 gi|8671852|gb|AAF78415.1|AC009273_21   Contains similarity to an unknown protein F4I18.28 gi|7486466 from
           Arabidopsis thaliana BAC F4I18 gb|AC004665.  ESTs
           gb|F14309, gb|AI998750, gb|995247, gb|T14224 and
           gb|AI995247 come from this gene
 gi|12083290|gb|AAG48804.1|AF332441_1   unknown protein [Arabidopsis thaliana]
 gi|17381255|gb|AAL36046.1|   At1g01820/T1N6_18 [Arabidopsis thaliana]
 gi|20453367|gb|AAM19922.1|   At1g01820/T1N6_18 [Arabidopsis thaliana]
 gi|21555588|gb|AAM63892.1|   unknown [Arabidopsis thaliana]
          Length = 235

 Score =  103 bits (258), Expect = 3e-22
 Identities = 55/93 (59%), Positives = 63/93 (67%)
 Frame = +3

Query: 3   EVAELQRXXXXXXXXXXXXXXXXXXXXXQYQMKLQKCNERRLALIKSSLDIVVAIGLLQL 182
           EV EL R                     QY+ K++K NER LALIK+ +D+VVA GLLQL
Sbjct: 141 EVGELGRLSASIKKLEKEIGNKDKHQNEQYRAKVEKSNERSLALIKAGMDVVVAFGLLQL 200

Query: 183 APKKVTPRVTGAFGFASSLIACYQLLPAPAKSK 281
           APKKVTPRVTGAFGFASSLI+CYQLLP+  KSK
Sbjct: 201 APKKVTPRVTGAFGFASSLISCYQLLPSHPKSK 233



>gi|8489788|gb|AAF75750.1|AF261140_1   unknown [Lycopersicon esculentum]
          Length = 235

 Score =  103 bits (258), Expect = 3e-22
 Identities = 55/93 (59%), Positives = 61/93 (65%)
 Frame = +3

Query: 3   EVAELQRXXXXXXXXXXXXXXXXXXXXXQYQMKLQKCNERRLALIKSSLDIVVAIGLLQL 182
           E+ EL R                     QY+ KLQK NER LALIK+  DIVVA+GLLQL
Sbjct: 141 EIGELGRLSSSMKKLEKELKNTDKYMNEQYRSKLQKSNERSLALIKAGTDIVVAVGLLQL 200

Query: 183 APKKVTPRVTGAFGFASSLIACYQLLPAPAKSK 281
           APKKVTPRVTGAFGF SSLI+CYQLLP+  K K
Sbjct: 201 APKKVTPRVTGAFGFVSSLISCYQLLPSSPKDK 233



>gi|15233030|ref|NP_191666.1|   putative protein; protein id: At3g61070.1 [Arabidopsis thaliana]
 gi|11358250|pir||T50528   hypothetical protein T27I15_160 - Arabidopsis thaliana
 gi|8388623|emb|CAB94143.1|   putative protein [Arabidopsis thaliana]
          Length = 238

 Score = 97.1 bits (240), Expect = 4e-20
 Identities = 47/64 (73%), Positives = 56/64 (87%)
 Frame = +3

Query: 90  YQMKLQKCNERRLALIKSSLDIVVAIGLLQLAPKKVTPRVTGAFGFASSLIACYQLLPAP 269
           Y+ KLQK N+R LALIKSS+DI+VAIGLLQLAPK ++PRVTGAFGF +SLI+CYQLLP+ 
Sbjct: 173 YRAKLQKSNDRTLALIKSSMDIIVAIGLLQLAPKTISPRVTGAFGFTTSLISCYQLLPSR 232

Query: 270 AKSK 281
            K K
Sbjct: 233 PKLK 236



>gi|14335058|gb|AAK59793.1|   At2g45740/F4I18.28 [Arabidopsis thaliana]
 gi|16323256|gb|AAL15362.1|   At2g45740/F4I18.28 [Arabidopsis thaliana]
          Length = 105

 Score = 94.4 bits (233), Expect = 3e-19
 Identities = 50/93 (53%), Positives = 59/93 (63%)
 Frame = +3

Query: 3   EVAELQRXXXXXXXXXXXXXXXXXXXXXQYQMKLQKCNERRLALIKSSLDIVVAIGLLQL 182
           EV E+ R                      Y+ KL+K NER LALIKS++DIVVA GLLQL
Sbjct: 11  EVGEMGRLSSSMKKIEKGLKNGNKYQDEDYRAKLKKSNERSLALIKSAMDIVVAAGLLQL 70

Query: 183 APKKVTPRVTGAFGFASSLIACYQLLPAPAKSK 281
           AP K+TPRVTGAFGF +S+I+CYQLLP   K K
Sbjct: 71  APTKITPRVTGAFGFITSIISCYQLLPTRPKIK 103



>gi|18406877|ref|NP_566055.1|   expressed protein; protein id: At2g45740.1, supported by cDNA:
           12250., supported by cDNA: gi_15450879 [Arabidopsis
           thaliana]
 gi|15450880|gb|AAK96711.1|   Unknown protein [Arabidopsis thaliana]
 gi|20197204|gb|AAC28551.2|   expressed protein [Arabidopsis thaliana]
 gi|21537163|gb|AAM61504.1|   unknown [Arabidopsis thaliana]
          Length = 236

 Score = 94.4 bits (233), Expect = 3e-19
 Identities = 50/93 (53%), Positives = 59/93 (63%)
 Frame = +3

Query: 3   EVAELQRXXXXXXXXXXXXXXXXXXXXXQYQMKLQKCNERRLALIKSSLDIVVAIGLLQL 182
           EV E+ R                      Y+ KL+K NER LALIKS++DIVVA GLLQL
Sbjct: 142 EVGEMGRLSSSMKKIEKGLKNGNKYQDEDYRAKLKKSNERSLALIKSAMDIVVAAGLLQL 201

Query: 183 APKKVTPRVTGAFGFASSLIACYQLLPAPAKSK 281
           AP K+TPRVTGAFGF +S+I+CYQLLP   K K
Sbjct: 202 APTKITPRVTGAFGFITSIISCYQLLPTRPKIK 234



>gi|7486466|pir||T02473   hypothetical protein At2g45740 [imported] - Arabidopsis thaliana
          Length = 239

 Score = 87.0 bits (214), Expect = 4e-17
 Identities = 45/85 (52%), Positives = 55/85 (64%)
 Frame = +3

Query: 3   EVAELQRXXXXXXXXXXXXXXXXXXXXXQYQMKLQKCNERRLALIKSSLDIVVAIGLLQL 182
           EV E+ R                      Y+ KL+K NER LALIKS++DIVVA GLLQL
Sbjct: 142 EVGEMGRLSSSMKKIEKGLKNGNKYQDEDYRAKLKKSNERSLALIKSAMDIVVAAGLLQL 201

Query: 183 APKKVTPRVTGAFGFASSLIACYQL 257
           AP K+TPRVTGAFGF +S+I+CYQ+
Sbjct: 202 APTKITPRVTGAFGFITSIISCYQV 226



>gi|24644071|ref|NP_649494.1|   CG14655-PA [Drosophila melanogaster]
 gi|7296818|gb|AAF52094.1|   CG14655-PA [Drosophila melanogaster]
          Length = 525

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 217 RLDLLAHSSLAISCSQPQPNPSDPPEGVSVGSSNVATSK 333
           R+ L     + + CS P PNP+  P   S  S+  AT K
Sbjct: 173 RIHLKVVHMMGVPCSNPNPNPNPSPTPASTTSAVTATPK 211



>gi|21225607|ref|NP_631386.1|   1,4-alpha-glucan branching enzyme. [Streptomyces coelicolor A3(2)]
 gi|8246827|emb|CAB92878.1|   1,4-alpha-glucan branching enzyme. [Streptomyces coelicolor A3(2)]
          Length = 741

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = -2

Query: 308 PTDTPSGGSLGFGWGWEQLIASDE*ASKSKRPCHTRSHF--LGSQLKQPYSNNYV 150
           PTDT   G LGFG  W      D     +  P H R H   +   +   YS NYV
Sbjct: 485 PTDT---GGLGFGLKWNMGWMHDSLEYVAHEPVHRRYHHHEMTFSMVYAYSENYV 536



>gi|421646|pir||S34218   1,4-alpha-glucan branching enzyme (EC 2.4.1.18) II - Streptomyces
           coelicolor
 gi|581619|emb|CAA52109.1|   1,4-alpha-glucan branching enzyme [Streptomyces coelicolor A3(2)]
          Length = 741

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = -2

Query: 308 PTDTPSGGSLGFGWGWEQLIASDE*ASKSKRPCHTRSHF--LGSQLKQPYSNNYV 150
           PTDT   G LGFG  W      D     +  P H R H   +   +   YS NYV
Sbjct: 485 PTDT---GGLGFGLKWNMGWMHDSLEYVAHEPVHRRYHHHEMTFSMVYAYSENYV 536



>gi|20826363|ref|XP_144849.1|   similar to immunoglobulin light chain [Mus musculus]
          Length = 127

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 379 DFQVHMSQSSSSTFISYW-LQHWNCPLTPLQ 290
           DF + +S   S     Y+ LQHWN PLT LQ
Sbjct: 94  DFTLTISNVQSEDLADYFCLQHWNYPLTVLQ 124



>gi|16081331|ref|NP_393652.1|   conserved hypothetical protein [Thermoplasma acidophilum]
 gi|10639318|emb|CAC11320.1|   conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 271

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -2

Query: 299 TPSGGSLGFGWGWEQLIASDE*ASKSKR--PCHTRSHFLGSQLKQPYSNNYVEARFDE 132
           T SG S G  +G   + A D   S S+   P +  S +L  ++  P +  Y+E RFD+
Sbjct: 70  TRSGASFGISYGPMVVAAHDVDLSSSRMGVPGYMTSSYLLYRMFGPEAKEYIEIRFDK 127



>gi|5174485|ref|NP_006030.1|   mannose receptor, C type 2; KIAA0709 gene product; endocytic
           receptor (macrophage mannose receptor family); likely
           ortholog of mouse mannose receptor, C type 2 [Homo
           sapiens]
 gi|3327232|dbj|BAA31684.1|   KIAA0709 protein [Homo sapiens]
 gi|6492130|gb|AAF14192.1|AF107292_1   urokinase receptor-associated protein uPARAP [Homo sapiens]
          Length = 1479

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 22/53 (41%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +2

Query: 65  PGAVKERAIPDETAEVQREASRSHQIEPRHSCCYR--AASTGSQESDSACDRG 217
           P A  E   PD  A V+ E   S Q  P    CYR  A     QES  AC RG
Sbjct: 363 PNATAEPTPPDRWANVKVECEPSWQ--PFQGHCYRLQAEKRSWQESKKACLRG 413



>gi|4835878|gb|AAD30280.1|AF134838_1   endocytic receptor Endo180 [Homo sapiens]
          Length = 1479

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 22/53 (41%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +2

Query: 65  PGAVKERAIPDETAEVQREASRSHQIEPRHSCCYR--AASTGSQESDSACDRG 217
           P A  E   PD  A V+ E   S Q  P    CYR  A     QES  AC RG
Sbjct: 363 PNATAEPTPPDRWANVKVECEPSWQ--PFQGHCYRLQAEKRSWQESKKACLRG 413






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Dec 9, 2002  8:40 PM
  Number of letters in database: 397,579,747
  Number of sequences in database:  1,247,039
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 284,949,057
Number of Sequences: 1247039
Number of extensions: 5662265
Number of successful extensions: 15794
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15786
length of database: 397,579,747
effective HSP length: 123
effective length of database: 244,193,950
effective search space used: 5860654800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)