BLASTX 2.2.5 [Nov-16-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1039751324-019620-805

Query= 
         (299 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,247,039 sequences; 397,579,747 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports

Related Structures

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13309986|gb|AAK18118.1|  BabA [Helicobacter pylori]             36   0.10  
gi|18844990|dbj|BAB85469.1|  Rad6 [Oryza sativa (japonica cu...    35   0.30  
gi|13516453|dbj|BAB40311.1|  ubiquitin-conjugating enzyme (E...    35   0.30  
gi|13516451|dbj|BAB40310.1|  ubiquitin-conjugating enzyme (E...    35   0.30  
gi|22202731|dbj|BAC07388.1|  putative Rad6 [Oryza sativa (ja...    35   0.30  
gi|136640|sp|P25866|UBC2_WHEAT  Ubiquitin-conjugating enzyme...    34   0.39  
gi|8118527|gb|AAF73016.1|AF262934_1  ubiquitin conjugating p...    33   0.67  
gi|18395424|ref|NP_565289.1|  E2, ubiquitin-conjugating enzy...    33   0.87  
gi|464980|sp|P35130|UBC2_MEDSA  Ubiquitin-conjugating enzyme...    33   0.87  
gi|18394114|ref|NP_563951.1|  E2, ubiquitin-conjugating enzy...    32   1.9   

Alignments


>gi|13309986|gb|AAK18118.1|   BabA [Helicobacter pylori]
          Length = 157

 Score = 36.2 bits (82), Expect = 0.10
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
 Frame = -3

Query: 228 K*VATTLGKQVGEGRGSSSGITTTEDFLCF**VIQTGKARIAYL*EKLVAETATQSCPWL 49
           K V TT+  +V E  G++SG++ TE       V  + +A +       +  T  ++CPW 
Sbjct: 40  KTVNTTISSKVVEAEGNTSGVSYTEITNKLDGVPDSAQALLVQ--ASTLINTINEACPWF 97

Query: 48  SRPSSSAPQ--------SRGLCG 4
           +  SS++P         S GLCG
Sbjct: 98  NATSSNSPNAPQWRWNPSGGLCG 120



>gi|18844990|dbj|BAB85469.1|   Rad6 [Oryza sativa (japonica cultivar-group)]
          Length = 152

 Score = 34.7 bits (78), Expect = 0.30
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = +3

Query: 3   NRKVREIVEQSWTAD 47
           NRKVREIVEQSWTAD
Sbjct: 138 NRKVREIVEQSWTAD 152



>gi|13516453|dbj|BAB40311.1|   ubiquitin-conjugating enzyme (E2) [Nicotiana tabacum]
          Length = 152

 Score = 34.7 bits (78), Expect = 0.30
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = +3

Query: 3   NRKVREIVEQSWTAD 47
           NRKVREIVEQSWTAD
Sbjct: 138 NRKVREIVEQSWTAD 152



>gi|13516451|dbj|BAB40310.1|   ubiquitin-conjugating enzyme (E2) [Nicotiana tabacum]
          Length = 152

 Score = 34.7 bits (78), Expect = 0.30
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = +3

Query: 3   NRKVREIVEQSWTAD 47
           NRKVREIVEQSWTAD
Sbjct: 138 NRKVREIVEQSWTAD 152



>gi|22202731|dbj|BAC07388.1|   putative Rad6 [Oryza sativa (japonica cultivar-group)]
 gi|22202784|dbj|BAC07440.1|   putative Rad6 [Oryza sativa (japonica cultivar-group)]
          Length = 174

 Score = 34.7 bits (78), Expect = 0.30
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = +3

Query: 3   NRKVREIVEQSWTAD 47
           NRKVREIVEQSWTAD
Sbjct: 160 NRKVREIVEQSWTAD 174



>gi|136640|sp|P25866|UBC2_WHEAT   Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase)
           (Ubiquitin carrier protein)
 gi|170785|gb|AAA34310.1|   ubiquitin carrier protein
          Length = 152

 Score = 34.3 bits (77), Expect = 0.39
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = +3

Query: 3   NRKVREIVEQSWTAD 47
           NRKVRE+VEQSWTAD
Sbjct: 138 NRKVREVVEQSWTAD 152



>gi|8118527|gb|AAF73016.1|AF262934_1   ubiquitin conjugating protein [Avicennia marina]
          Length = 152

 Score = 33.5 bits (75), Expect = 0.67
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = +3

Query: 3   NRKVREIVEQSWTAD 47
           NR+VREIVEQSWTAD
Sbjct: 138 NRRVREIVEQSWTAD 152



>gi|18395424|ref|NP_565289.1|   E2, ubiquitin-conjugating enzyme 2 (UBC2); protein id: At2g02760.1,
           supported by cDNA: gi_13899126, supported by cDNA:
           gi_18377455 [Arabidopsis thaliana]
 gi|1174844|sp|P42745|UBC2_ARATH   Ubiquitin-conjugating enzyme E2-17 kDa 2 (Ubiquitin-protein ligase
           2) (Ubiquitin carrier protein 2)
 gi|1076426|pir||S43783   ubiquitin-conjugating enzyme UBC2 - Arabidopsis thaliana
 gi|431264|gb|AAA32899.1|   ubiquitin conjugating enzyme
 gi|2689243|emb|CAA73476.1|   ubiquitin conjugating enzyme [Arabidopsis thaliana]
 gi|2947065|gb|AAC05346.1|   E2, ubiquitin-conjugating enzyme 2 (UBC2) [Arabidopsis thaliana]
 gi|13899127|gb|AAK48985.1|AF370558_1   putative ubiquitin-conjugating enzyme E2 [Arabidopsis thaliana]
 gi|18377456|gb|AAL66894.1|   putative ubiquitin-conjugating enzyme E2 [Arabidopsis thaliana]
          Length = 152

 Score = 33.1 bits (74), Expect = 0.87
 Identities = 13/15 (86%), Positives = 15/15 (100%)
 Frame = +3

Query: 3   NRKVREIVEQSWTAD 47
           NR+VRE+VEQSWTAD
Sbjct: 138 NRRVREVVEQSWTAD 152



>gi|464980|sp|P35130|UBC2_MEDSA   Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase)
           (Ubiquitin carrier protein)
 gi|166422|gb|AAA18528.1|   ubiquitin carrier protein
          Length = 152

 Score = 33.1 bits (74), Expect = 0.87
 Identities = 13/15 (86%), Positives = 15/15 (100%)
 Frame = +3

Query: 3   NRKVREIVEQSWTAD 47
           NR+VRE+VEQSWTAD
Sbjct: 138 NRRVREVVEQSWTAD 152



>gi|18394114|ref|NP_563951.1|   E2, ubiquitin-conjugating enzyme 1 (UBC1); protein id: At1g14400.1,
           supported by cDNA: 18146., supported by cDNA:
           gi_12083309, supported by cDNA: gi_166923, supported by
           cDNA: gi_20259106 [Arabidopsis thaliana]
 gi|136636|sp|P25865|UBC1_ARATH   Ubiquitin-conjugating enzyme E2-17 kDa 1 (Ubiquitin-protein ligase
           1) (Ubiquitin carrier protein 1)
 gi|1076424|pir||S43781   ubiquitin-conjugating enzyme UBC1 - Arabidopsis thaliana
 gi|2981894|pdb|2AAK|    Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
 gi|166924|gb|AAA32903.1|   ubiquitin carrier protein
 gi|431260|gb|AAA32897.1|   ubiquitin conjugating enzyme
 gi|7262682|gb|AAF43940.1|AC012188_17   Strong similarity to a Ubiquitin-conjugating Enzyme (E2-17 KD 1)
           from Arabidopsis thaliana gi|136636 and contains a
           Ubiqutin-conjugating Enzyme PF|00179 domain.  ESTs
           gb|AA728508, gb|H36735, gb|AI100736 come from this gene
 gi|12083310|gb|AAG48814.1|AF332451_1   putative E2, ubiquitin-conjugating enzyme 1 [Arabidopsis thaliana]
 gi|17979147|gb|AAL49769.1|   putative E2, ubiquitin-conjugating enzyme UBC1 [Arabidopsis
           thaliana]
 gi|20259107|gb|AAM14269.1|   putative ubiquitin-conjugating enzyme 1 (UBC1) [Arabidopsis
           thaliana]
 gi|21553917|gb|AAM63000.1|   E2, ubiquitin-conjugating enzyme UBC1 [Arabidopsis thaliana]
          Length = 152

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 12/15 (80%), Positives = 15/15 (100%)
 Frame = +3

Query: 3   NRKVREIVEQSWTAD 47
           NR+VR++VEQSWTAD
Sbjct: 138 NRRVRDVVEQSWTAD 152






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Dec 9, 2002  8:40 PM
  Number of letters in database: 397,579,747
  Number of sequences in database:  1,247,039
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 210,954,128
Number of Sequences: 1247039
Number of extensions: 3774853
Number of successful extensions: 8876
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 8768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8874
length of database: 397,579,747
effective HSP length: 75
effective length of database: 304,051,822
effective search space used: 7297243728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)