BLASTX 2.2.5 [Nov-16-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1039725052-019585-26071

Query= 
         (570 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,247,039 sequences; 397,579,747 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|14090233|dbj|BAA77821.2|  homeobox gene [Oryza sativa (ja...   166   1e-40 
gi|14149137|dbj|BAB55658.1|  KNOX family class 2 homeodomain...   166   1e-40 
gi|14149139|dbj|BAB55659.1|  KNOX family class 2 homeodomain...   162   3e-39 
gi|14090235|dbj|BAA77822.2|  homeobox gene [Oryza sativa (ja...   162   3e-39 
gi|7446252|pir||T03875  probable homeobox protein OSH45, spl...   157   6e-38 
gi|15238743|ref|NP_197904.1|  KNAT3 homeodomain protein; pro...   156   2e-37 
gi|21554222|gb|AAM63298.1|  KNAT3 homeodomain protein [Arabi...   156   2e-37 
gi|21539535|gb|AAM53320.1|  KNAT3 homeodomain protein [Arabi...   156   2e-37 
gi|7446253|pir||T03874  probable homeobox protein OSH45, spl...   155   3e-37 
gi|6016216|sp|P56660|HKL2_MAIZE  Homeobox protein knotted-1 ...   155   3e-37 
gi|1805619|dbj|BAA08554.1|  OSH42 transcript [Oryza sativa (...   155   3e-37 
gi|3023961|sp|O04136|HKL3_MALDO  Homeobox protein knotted-1 ...   154   7e-37 
gi|6016226|sp|O22300|HKLB_LYCES  Homeobox protein knotted-1 ...   154   7e-37 
gi|1045044|emb|CAA63131.1|  KNAT4 homeobox protein [Arabidop...   153   1e-36 
gi|15238942|ref|NP_196667.1|  HOMEOBOX PROTEIN KNOTTED-1 LIK...   153   1e-36 
gi|6016222|sp|P56664|HKL6_MAIZE  Homeobox protein knotted-1 ...   152   2e-36 
gi|4098244|gb|AAD09582.1|  homeobox 1 protein [Lycopersicon ...   151   6e-36 
gi|11463943|dbj|BAB18585.1|  CRKNOX3 [Ceratopteris richardii]     148   5e-35 
gi|7446245|pir||T02220  homeobox protein NTH23 - common toba...   147   6e-35 
gi|1045046|emb|CAA63132.1|  KNAT5 homeobox protein [Arabidop...   142   2e-33 
gi|15236649|ref|NP_194932.1|  homeodomain containing protein...   142   2e-33 
gi|4098246|gb|AAD00253.1|  homeobox 2 protein [Lycopersicon ...   139   3e-32 
gi|6016214|sp|P56659|HKL1_MAIZE  Homeobox protein knotted-1 ...   137   6e-32 
gi|14149141|dbj|BAB55660.1|  KNOX family class 2 homeodomain...   136   1e-31 
gi|25446694|gb|AAN74841.1|  Putative homeobox gene [Oryza sa...   136   1e-31 
gi|4887620|dbj|BAA77823.1|  homeobox gene [Oryza sativa (jap...   136   1e-31 
gi|14348597|gb|AAK61309.1|AF285148_1  class 2 KNOTTED1-like ...   136   1e-31 
gi|25386223|pir||A96655  hypothetical protein F16P17.16 [imp...   134   9e-31 
gi|21618231|gb|AAM67281.1|  homeodomain-containing protein H...   134   9e-31 
gi|18407708|ref|NP_564805.1|  homeodomain-containing protein...   134   9e-31 
gi|1170191|sp|P46606|HD1_BRANA  Homeobox protein HD1 >gi|107...   134   9e-31 
gi|20530672|gb|AAM27190.1|AF457121_1  knotted1-like homeodom...    97   2e-19 
gi|4887614|dbj|BAA77820.1|  homeobox gene [Oryza sativa (jap...    97   2e-19 
gi|6016227|sp|P56668|HKLB_MAIZE  Homeobox protein knotted-1 ...    97   2e-19 
gi|5103725|dbj|BAA79224.1|  knotted1-type homeobox protein O...    97   2e-19 
gi|11967917|dbj|BAB19772.1|  putative knotted1-type homeobox...    97   2e-19 
gi|6016220|sp|P56663|HKL5_MAIZE  Homeobox protein knotted-1 ...    96   2e-19 
gi|7446248|pir||T02783  probable homeotic protein - rice >gi...    96   2e-19 
gi|6016228|sp|P56669|HLG3_MAIZE  Homeobox protein liguleless 3     95   5e-19 
gi|4240539|gb|AAD13611.1|  knotted class 1 homeodomain prote...    95   5e-19 
gi|4589449|dbj|BAA76750.1|  KN1-type homeobox protein [Nicot...    94   1e-18 
gi|6942297|gb|AAF32398.1|AF224498_1  KNOTTED-1-like homeobox...    91   9e-18 
gi|6942300|gb|AAF32399.1|AF224499_1  KNOTTED-1-like homeobox...    91   9e-18 
gi|1171924|sp|P46609|OSH1_ORYSA  Homeobox protein OSH1 >gi|5...    90   2e-17 
gi|478420|pir||JQ2379  homeobox 1 protein OSH1 - rice              90   2e-17 
gi|3327275|dbj|BAA31701.1|  PKn3 [Ipomoea nil]                     90   2e-17 
gi|21431769|sp|P46640|HKL2_ARATH  Homeobox protein knotted-1...    89   3e-17 
gi|15223167|ref|NP_177208.1|  homeotic protein (ATK1); prote...    89   3e-17 
gi|7446239|pir||S57818  homeotic protein ATK1 - Arabidopsis ...    89   3e-17 
gi|3024086|sp|Q43484|KNX3_HORVU  Homeobox protein KNOX3 (Hoo...    89   3e-17 
gi|2522484|gb|AAB81079.1|  knotted class 1 homeodomain prote...    89   3e-17 
gi|6016217|sp|O04135|HKL2_MALDO  Homeobox protein knotted-1 ...    89   3e-17 
gi|4589882|dbj|BAA76904.1|  homeobox 20 [Nicotiana tabacum]        89   3e-17 
gi|3929314|gb|AAC79869.1|  homeobox protein OVG2 [Dendrobium...    89   5e-17 
gi|6016225|sp|P56667|HKLA_MAIZE  Homeobox protein knotted-1 ...    89   5e-17 
gi|3023974|sp|Q41330|HKN1_LYCES  Homeotic protein knotted-1 ...    89   5e-17 
gi|7581979|emb|CAB88029.1|  knotted1-like homeobox protein [...    89   5e-17 
gi|123183|sp|P24345|HKN1_MAIZE  Homeotic protein knotted-1 >...    88   6e-17 
gi|5103727|dbj|BAA79225.1|  knotted1-type homeobox protein O...    88   8e-17 
gi|6016215|sp|O04134|HKL1_MALDO  Homeobox protein knotted-1 ...    88   8e-17 
gi|3327271|dbj|BAA31699.1|  PKn2 [Ipomoea nil]                     88   8e-17 
gi|20977646|gb|AAM28232.1|  knotted-1-like protein 2 [Helian...    88   8e-17 
gi|3327273|dbj|BAA31700.1|  short product from PKn2 alternat...    88   8e-17 
gi|15236418|ref|NP_192555.1|  KNAT1 homeobox-like protein; p...    87   1e-16 
gi|19908861|gb|AAM03027.1|AF482995_1  homeodomain protein KN...    87   1e-16 
gi|19908859|gb|AAM03026.1|AF482994_1  homeodomain protein KN...    87   1e-16 
gi|3327269|dbj|BAA31698.1|  PKn1 [Ipomoea nil]                     87   1e-16 
gi|11463937|dbj|BAB18582.1|  CRKNOX1 [Ceratopteris richardii]      87   1e-16 
gi|20139943|sp|Q9M6D9|STM_BRAOL  Homeobox protein Shootmeris...    87   1e-16 
gi|15220767|ref|NP_176426.1|  homeobox protein, putative; pr...    87   1e-16 
gi|2129615|pir||S68456  homeotic protein shootmeristemless, ...    87   1e-16 
gi|15637075|dbj|BAB68203.1|  transcription factor OSH3 [Oryz...    87   1e-16 
gi|7940290|gb|AAF70849.1|AC003113_16  F2401.9 [Arabidopsis t...    87   1e-16 
gi|15636957|dbj|BAB68144.1|  transcription factor OSH3 [Oryz...    87   1e-16 
gi|15637057|dbj|BAB68194.1|  transcription factor OSH3 [Oryz...    87   1e-16 
gi|15637045|dbj|BAB68188.1|  transcription factor OSH3 [Oryz...    87   1e-16 
gi|15636929|dbj|BAB68130.1|  transcription factor OSH3 [Oryz...    87   1e-16 
gi|15636969|dbj|BAB68150.1|  transcription factor OSH3 [Oryz...    87   1e-16 
gi|15637003|dbj|BAB68167.1|  transcription factor OSH3 [Oryz...    87   1e-16 
gi|11463939|dbj|BAB18583.1|  CRKNOX1s [Ceratopteris richardii]     87   1e-16 
gi|18389212|gb|AAL67665.1|  invaginata [Antirrhinum majus]         87   1e-16 
gi|15667619|dbj|BAB68310.1|  transcription factor OSH3 [Oryz...    87   1e-16 
gi|19424064|gb|AAL87330.1|  putative homeobox protein [Arabi...    87   1e-16 
gi|1170312|sp|P46608|HMB1_SOYBN  Homeobox protein SBH1 >gi|6...    87   2e-16 
gi|11037020|gb|AAG27464.1|AF308454_1  knotted class I homeod...    87   2e-16 
gi|18389214|gb|AAL67666.1|  hirzina [Antirrhinum majus]            87   2e-16 
gi|7446294|pir||T06382  Knox protein 1 - garden pea >gi|3426...    87   2e-16 
gi|4099826|gb|AAD00691.1|  homeobox transcription factor SKN...    87   2e-16 
gi|7446292|pir||T02785  probable homeotic protein - rice >gi...    86   2e-16 
gi|3327240|dbj|BAA31688.1|  homeobox gene [Oryza sativa (jap...    86   2e-16 
gi|4887608|dbj|BAA77817.1|  homeobox gene [Oryza sativa (jap...    86   2e-16 
gi|3024577|sp|Q41853|RSH1_MAIZE  Homeobox protein rough shea...    86   2e-16 
gi|22074785|gb|AAM47027.1|  shootmeristemless-like [Petunia ...    86   3e-16 
gi|4099828|gb|AAD00692.1|  homeobox transcription factor SKN...    86   3e-16 
gi|5802260|gb|AAD51632.1|AF170172_1  KNOX1 homeodomain prote...    86   3e-16 
gi|11463941|dbj|BAB18584.1|  CRKNOX2 [Ceratopteris richardii]      86   3e-16 
gi|6016218|sp|P56661|HKL3_MAIZE  Homeobox protein knotted-1 ...    86   3e-16 
gi|6016219|sp|P56662|HKL4_MAIZE  Homeobox protein knotted-1 ...    86   3e-16 
gi|3928843|gb|AAC84001.1|  homeobox protein [Picea abies]          86   3e-16 
gi|4589884|dbj|BAA76905.1|  homeobox 22 [Nicotiana tabacum]        86   3e-16 

Alignments


>gi|14090233|dbj|BAA77821.2|   homeobox gene [Oryza sativa (japonica cultivar-group)]
          Length = 183

 Score =  166 bits (421), Expect = 1e-40
 Identities = 80/100 (80%), Positives = 83/100 (83%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           +EKLVDIRE ILRKRRAGKLPGDTAS LKAWWQAHSKWPYPTE+DKARLVQETGLQLKQI
Sbjct: 85  KEKLVDIREEILRKRRAGKLPGDTASILKAWWQAHSKWPYPTEDDKARLVQETGLQLKQI 144

Query: 183 SNWFINQRKRNWHSNPAXXXXXXXXXXXXNAGDGKAEQSW 302
           +NWFINQRKRNWHSNPA              GDG AEQSW
Sbjct: 145 NNWFINQRKRNWHSNPASSGEKTKKKRNV-TGDGGAEQSW 183



>gi|14149137|dbj|BAB55658.1|   KNOX family class 2 homeodomain protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 212

 Score =  166 bits (421), Expect = 1e-40
 Identities = 80/100 (80%), Positives = 83/100 (83%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           +EKLVDIRE ILRKRRAGKLPGDTAS LKAWWQAHSKWPYPTE+DKARLVQETGLQLKQI
Sbjct: 114 KEKLVDIREEILRKRRAGKLPGDTASILKAWWQAHSKWPYPTEDDKARLVQETGLQLKQI 173

Query: 183 SNWFINQRKRNWHSNPAXXXXXXXXXXXXNAGDGKAEQSW 302
           +NWFINQRKRNWHSNPA              GDG AEQSW
Sbjct: 174 NNWFINQRKRNWHSNPASSGEKTKKKRNV-TGDGGAEQSW 212



>gi|14149139|dbj|BAB55659.1|   KNOX family class 2 homeodomain protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 317

 Score =  162 bits (409), Expect = 3e-39
 Identities = 75/77 (97%), Positives = 76/77 (98%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           REKLVDIRE ILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI
Sbjct: 224 REKLVDIREEILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 283

Query: 183 SNWFINQRKRNWHSNPA 233
           +NWFINQRKRNWHSNPA
Sbjct: 284 NNWFINQRKRNWHSNPA 300



>gi|14090235|dbj|BAA77822.2|   homeobox gene [Oryza sativa (japonica cultivar-group)]
          Length = 178

 Score =  162 bits (409), Expect = 3e-39
 Identities = 75/77 (97%), Positives = 76/77 (98%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           REKLVDIRE ILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI
Sbjct: 85  REKLVDIREEILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 144

Query: 183 SNWFINQRKRNWHSNPA 233
           +NWFINQRKRNWHSNPA
Sbjct: 145 NNWFINQRKRNWHSNPA 161



>gi|7446252|pir||T03875   probable homeobox protein OSH45, splice form OSH45 [similarity] -
           rice
 gi|1805618|dbj|BAA08553.1|   OSH45 transcript [Oryza sativa (japonica cultivar-group)]
          Length = 374

 Score =  157 bits (398), Expect = 6e-38
 Identities = 73/96 (76%), Positives = 80/96 (83%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           +EKL+DIRE ILRKRRAGKLPGDT STLKAWWQ+H+KWPYPTEEDKARLVQETGLQLKQI
Sbjct: 280 KEKLIDIREEILRKRRAGKLPGDTTSTLKAWWQSHAKWPYPTEEDKARLVQETGLQLKQI 339

Query: 183 SNWFINQRKRNWHSNPAXXXXXXXXXXXXNAGDGKA 290
           +NWFINQRKRNWHSNP+            NAGD  +
Sbjct: 340 NNWFINQRKRNWHSNPS-SSTSVKTKRKSNAGDNNS 374



>gi|15238743|ref|NP_197904.1|   KNAT3 homeodomain protein; protein id: At5g25220.1, supported by
           cDNA: 21240. [Arabidopsis thaliana]
 gi|1346387|sp|P48000|HKL3_ARATH   Homeobox protein knotted-1 like 3 (KNAT3)
 gi|1045042|emb|CAA63130.1|   KNAT3 homeobox protein [Arabidopsis thaliana]
 gi|4063731|gb|AAC98441.1|   KNAT3 homeodomain protein [Arabidopsis thaliana]
          Length = 431

 Score =  156 bits (394), Expect = 2e-37
 Identities = 73/98 (74%), Positives = 79/98 (80%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           +EK+VDIRE ILRKRRAGKLPGDT S LKAWWQ+HSKWPYPTEEDKARLVQETGLQLKQI
Sbjct: 332 KEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQI 391

Query: 183 SNWFINQRKRNWHSNPAXXXXXXXXXXXXNAGDGKAEQ 296
           +NWFINQRKRNWHSNP+            NAGD    +
Sbjct: 392 NNWFINQRKRNWHSNPS-SSTVLKNKRKSNAGDNSGRE 428



>gi|21554222|gb|AAM63298.1|   KNAT3 homeodomain protein [Arabidopsis thaliana]
          Length = 431

 Score =  156 bits (394), Expect = 2e-37
 Identities = 73/98 (74%), Positives = 79/98 (80%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           +EK+VDIRE ILRKRRAGKLPGDT S LKAWWQ+HSKWPYPTEEDKARLVQETGLQLKQI
Sbjct: 332 KEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQI 391

Query: 183 SNWFINQRKRNWHSNPAXXXXXXXXXXXXNAGDGKAEQ 296
           +NWFINQRKRNWHSNP+            NAGD    +
Sbjct: 392 NNWFINQRKRNWHSNPS-SSTVLKNKRKSNAGDNSGRE 428



>gi|21539535|gb|AAM53320.1|   KNAT3 homeodomain protein [Arabidopsis thaliana]
 gi|23197862|gb|AAN15458.1|   KNAT3 homeodomain protein [Arabidopsis thaliana]
          Length = 306

 Score =  156 bits (394), Expect = 2e-37
 Identities = 73/98 (74%), Positives = 79/98 (80%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           +EK+VDIRE ILRKRRAGKLPGDT S LKAWWQ+HSKWPYPTEEDKARLVQETGLQLKQI
Sbjct: 207 KEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQI 266

Query: 183 SNWFINQRKRNWHSNPAXXXXXXXXXXXXNAGDGKAEQ 296
           +NWFINQRKRNWHSNP+            NAGD    +
Sbjct: 267 NNWFINQRKRNWHSNPS-SSTVLKNKRKSNAGDNSGRE 303



>gi|7446253|pir||T03874   probable homeobox protein OSH45, splice form OSH44 [similarity] -
           rice
 gi|1805617|dbj|BAA08552.1|   OSH44 transcript~homeobox gene [Oryza sativa (japonica
           cultivar-group)]
          Length = 375

 Score =  155 bits (392), Expect = 3e-37
 Identities = 69/77 (89%), Positives = 75/77 (97%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           +EKL+DIRE ILRKRRAGKLPGDT STLKAWWQ+H+KWPYPTEEDKARLVQETGLQLKQI
Sbjct: 280 KEKLIDIREEILRKRRAGKLPGDTTSTLKAWWQSHAKWPYPTEEDKARLVQETGLQLKQI 339

Query: 183 SNWFINQRKRNWHSNPA 233
           +NWFINQRKRNWHSNP+
Sbjct: 340 NNWFINQRKRNWHSNPS 356



>gi|6016216|sp|P56660|HKL2_MAIZE   Homeobox protein knotted-1 like 2
          Length = 88

 Score =  155 bits (392), Expect = 3e-37
 Identities = 71/75 (94%), Positives = 74/75 (98%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           R+KLVDIRE ILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI
Sbjct: 14  RDKLVDIREEILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 73

Query: 183 SNWFINQRKRNWHSN 227
           +NWFINQRKRNWH+N
Sbjct: 74  NNWFINQRKRNWHNN 88



>gi|1805619|dbj|BAA08554.1|   OSH42 transcript [Oryza sativa (japonica cultivar-group)]
          Length = 171

 Score =  155 bits (392), Expect = 3e-37
 Identities = 69/77 (89%), Positives = 75/77 (97%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           +EKL+DIRE ILRKRRAGKLPGDT STLKAWWQ+H+KWPYPTEEDKARLVQETGLQLKQI
Sbjct: 84  KEKLIDIREEILRKRRAGKLPGDTTSTLKAWWQSHAKWPYPTEEDKARLVQETGLQLKQI 143

Query: 183 SNWFINQRKRNWHSNPA 233
           +NWFINQRKRNWHSNP+
Sbjct: 144 NNWFINQRKRNWHSNPS 160



>gi|3023961|sp|O04136|HKL3_MALDO   Homeobox protein knotted-1 like 3 (KNAP3)
 gi|7488621|pir||T17010   knotted1-like homeobox protein - apple tree
 gi|1946222|emb|CAA96512.1|   knotted1-like homeobox protein [Malus x domestica]
          Length = 427

 Score =  154 bits (389), Expect = 7e-37
 Identities = 69/77 (89%), Positives = 74/77 (96%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           +EK+VDIRE ILRKRRAGKLPGDT S LKAWWQ+HSKWPYPTEEDKARLVQETGLQLKQI
Sbjct: 340 KEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQI 399

Query: 183 SNWFINQRKRNWHSNPA 233
           +NWFINQRKRNWHSNP+
Sbjct: 400 NNWFINQRKRNWHSNPS 416



>gi|6016226|sp|O22300|HKLB_LYCES   Homeobox protein knotted-1 like LET12
 gi|7489014|pir||T04318   homeobox protein LeT12, class II knotted-like - tomato
 gi|2529703|gb|AAC49918.1|   class II knotted-like homeodomain protein [Lycopersicon esculentum]
          Length = 426

 Score =  154 bits (389), Expect = 7e-37
 Identities = 69/77 (89%), Positives = 74/77 (96%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           +EK+VDIRE ILRKRRAGKLPGDT S LKAWWQ+HSKWPYPTEEDKARLVQETGLQLKQI
Sbjct: 337 KEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQI 396

Query: 183 SNWFINQRKRNWHSNPA 233
           +NWFINQRKRNWHSNP+
Sbjct: 397 NNWFINQRKRNWHSNPS 413



>gi|1045044|emb|CAA63131.1|   KNAT4 homeobox protein [Arabidopsis thaliana]
          Length = 393

 Score =  153 bits (386), Expect = 1e-36
 Identities = 68/77 (88%), Positives = 74/77 (96%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           +EK+VDIRE ILRKRRAGKLPGDT S LK+WWQ+HSKWPYPTEEDKARLVQETGLQLKQI
Sbjct: 296 KEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQI 355

Query: 183 SNWFINQRKRNWHSNPA 233
           +NWFINQRKRNWHSNP+
Sbjct: 356 NNWFINQRKRNWHSNPS 372



>gi|15238942|ref|NP_196667.1|   HOMEOBOX PROTEIN KNOTTED-1 LIKE 4 (KNAT4); protein id: At5g11060.1
           [Arabidopsis thaliana]
 gi|20141566|sp|P48001|HKL4_ARATH   Homeobox protein knotted-1 like 4 (KNAT4)
 gi|11357331|pir||T51795   HOMEOBOX PROTEIN KNOTTED-1 LIKE 4 (KNAT4) - Arabidopsis thaliana
 gi|9795158|emb|CAC03454.1|   HOMEOBOX PROTEIN KNOTTED-1 LIKE 4 (KNAT4) [Arabidopsis thaliana]
          Length = 419

 Score =  153 bits (386), Expect = 1e-36
 Identities = 68/77 (88%), Positives = 74/77 (96%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           +EK+VDIRE ILRKRRAGKLPGDT S LK+WWQ+HSKWPYPTEEDKARLVQETGLQLKQI
Sbjct: 296 KEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQI 355

Query: 183 SNWFINQRKRNWHSNPA 233
           +NWFINQRKRNWHSNP+
Sbjct: 356 NNWFINQRKRNWHSNPS 372



>gi|6016222|sp|P56664|HKL6_MAIZE   Homeobox protein knotted-1 like 6
 gi|6016223|sp|P56665|HKL7_MAIZE   Homeobox protein knotted-1 like 7
 gi|913144|gb|AAB33490.1|   KNOX6=class 2 knotted1-like homeobox gene knox6 product
           {homeodomain} [maize, Peptide Partial, 85 aa]
 gi|913145|gb|AAB33491.1|   KNOX7=class 1 knotted1-like homeobox gene knox7 product
           {homeodomain} [maize, Peptide Partial, 85 aa]
          Length = 85

 Score =  152 bits (385), Expect = 2e-36
 Identities = 69/75 (92%), Positives = 73/75 (97%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           +EKLVDIRE I+RKRRAGKLPGDTAS LKAWWQAHSKWPYPTE+DKARLVQETGLQLKQI
Sbjct: 11  KEKLVDIREEIMRKRRAGKLPGDTASVLKAWWQAHSKWPYPTEDDKARLVQETGLQLKQI 70

Query: 183 SNWFINQRKRNWHSN 227
           +NWFINQRKRNWHSN
Sbjct: 71  NNWFINQRKRNWHSN 85



>gi|4098244|gb|AAD09582.1|   homeobox 1 protein [Lycopersicon esculentum]
          Length = 392

 Score =  151 bits (381), Expect = 6e-36
 Identities = 67/77 (87%), Positives = 73/77 (94%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           +EK+VDIRE ILRKRRAGKLPGDT S LKAWWQ+HSKWPYPTEEDKARL +ETGLQLKQI
Sbjct: 299 KEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLARETGLQLKQI 358

Query: 183 SNWFINQRKRNWHSNPA 233
           +NWFINQRKRNWHSNP+
Sbjct: 359 NNWFINQRKRNWHSNPS 375



>gi|11463943|dbj|BAB18585.1|   CRKNOX3 [Ceratopteris richardii]
          Length = 436

 Score =  148 bits (373), Expect = 5e-35
 Identities = 64/77 (83%), Positives = 73/77 (94%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           ++++VD+RE ILRKRRAGKLPGDT S LKAWW AHSKWPYPTE++KARLVQETGLQLKQI
Sbjct: 349 KDRIVDVREEILRKRRAGKLPGDTTSVLKAWWHAHSKWPYPTEDEKARLVQETGLQLKQI 408

Query: 183 SNWFINQRKRNWHSNPA 233
           +NWFINQRKRNWHSNP+
Sbjct: 409 NNWFINQRKRNWHSNPS 425



>gi|7446245|pir||T02220   homeobox protein NTH23 - common tobacco
 gi|3116212|dbj|BAA25921.1|   homeobox gene [Nicotiana tabacum]
          Length = 422

 Score =  147 bits (372), Expect = 6e-35
 Identities = 66/75 (88%), Positives = 72/75 (96%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           +EKLVDIRE ILRKRRAGKLPGDT S LKAWWQ+H+KWPYPTEEDKA+LVQETGLQLKQI
Sbjct: 335 KEKLVDIREEILRKRRAGKLPGDTTSVLKAWWQSHAKWPYPTEEDKAKLVQETGLQLKQI 394

Query: 183 SNWFINQRKRNWHSN 227
           +NWFINQRKR+WHSN
Sbjct: 395 NNWFINQRKRDWHSN 409



>gi|1045046|emb|CAA63132.1|   KNAT5 homeobox protein [Arabidopsis thaliana]
          Length = 104

 Score =  142 bits (359), Expect = 2e-33
 Identities = 63/75 (84%), Positives = 70/75 (93%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           +EK+VDIRE I+RKRRAGKLPGDT S LK WW+ HSKWPYPTEEDKA+LVQETGLQLKQI
Sbjct: 12  KEKIVDIREEIMRKRRAGKLPGDTTSVLKEWWRTHSKWPYPTEEDKAKLVQETGLQLKQI 71

Query: 183 SNWFINQRKRNWHSN 227
           +NWFINQRKRNW+SN
Sbjct: 72  NNWFINQRKRNWNSN 86



>gi|15236649|ref|NP_194932.1|   homeodomain containing protein 1; protein id: At4g32040.1,
           supported by cDNA: gi_17224609, supported by cDNA:
           gi_2506030 [Arabidopsis thaliana]
 gi|12644283|sp|P48002|HKL5_ARATH   Homeobox protein knotted-1 like 5 (KNAT5) (Homeodomain containing
           protein 1)
 gi|7446300|pir||T04641   homeobox protein 1 - Arabidopsis thaliana
 gi|2506031|dbj|BAA22602.1|   homeodomein containing protein 1 [Arabidopsis thaliana]
 gi|3858938|emb|CAA16585.1|   homeodomain containing protein 1 [Arabidopsis thaliana]
 gi|7270108|emb|CAB79922.1|   homeodomain containing protein 1 [Arabidopsis thaliana]
 gi|17224610|gb|AAL37042.1|AF306661_1   homeodomain transcription factor KNAT5 [Arabidopsis thaliana]
          Length = 383

 Score =  142 bits (359), Expect = 2e-33
 Identities = 63/75 (84%), Positives = 70/75 (93%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           +EK+VDIRE I+RKRRAGKLPGDT S LK WW+ HSKWPYPTEEDKA+LVQETGLQLKQI
Sbjct: 291 KEKIVDIREEIMRKRRAGKLPGDTTSVLKEWWRTHSKWPYPTEEDKAKLVQETGLQLKQI 350

Query: 183 SNWFINQRKRNWHSN 227
           +NWFINQRKRNW+SN
Sbjct: 351 NNWFINQRKRNWNSN 365



>gi|4098246|gb|AAD00253.1|   homeobox 2 protein [Lycopersicon esculentum]
          Length = 310

 Score =  139 bits (349), Expect = 3e-32
 Identities = 60/75 (80%), Positives = 68/75 (90%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           R ++ D+RE ILRKRRAGKLPGDT + LK WWQ HSKWPYPTE+DKA+LV+ETGLQLKQI
Sbjct: 223 RSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQI 282

Query: 183 SNWFINQRKRNWHSN 227
           +NWFINQRKRNWHSN
Sbjct: 283 NNWFINQRKRNWHSN 297



>gi|6016214|sp|P56659|HKL1_MAIZE   Homeobox protein knotted-1 like 1
          Length = 88

 Score =  137 bits (346), Expect = 6e-32
 Identities = 59/75 (78%), Positives = 68/75 (90%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           + ++ D+RE ILRKRRAGKLPGDT S LK WWQ HSKWPYPTE+DKA+LV+ETGLQLKQI
Sbjct: 14  KSRIEDVREEILRKRRAGKLPGDTTSILKQWWQEHSKWPYPTEDDKAKLVEETGLQLKQI 73

Query: 183 SNWFINQRKRNWHSN 227
           +NWFINQRKRNWH+N
Sbjct: 74  NNWFINQRKRNWHNN 88



>gi|14149141|dbj|BAB55660.1|   KNOX family class 2 homeodomain protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 314

 Score =  136 bits (343), Expect = 1e-31
 Identities = 58/75 (77%), Positives = 68/75 (90%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           + ++ D+RE ILRKRRAGKLPGDT + LK WWQ HSKWPYPTE+DKA+LV+ETGLQLKQI
Sbjct: 228 KSRIEDVREEILRKRRAGKLPGDTTTILKQWWQQHSKWPYPTEDDKAKLVEETGLQLKQI 287

Query: 183 SNWFINQRKRNWHSN 227
           +NWFINQRKRNWH+N
Sbjct: 288 NNWFINQRKRNWHNN 302



>gi|25446694|gb|AAN74841.1|   Putative homeobox gene [Oryza sativa (japonica cultivar-group)]
          Length = 143

 Score =  136 bits (343), Expect = 1e-31
 Identities = 58/75 (77%), Positives = 68/75 (90%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           + ++ D+RE ILRKRRAGKLPGDT + LK WWQ HSKWPYPTE+DKA+LV+ETGLQLKQI
Sbjct: 57  KSRIEDVREEILRKRRAGKLPGDTTTILKQWWQQHSKWPYPTEDDKAKLVEETGLQLKQI 116

Query: 183 SNWFINQRKRNWHSN 227
           +NWFINQRKRNWH+N
Sbjct: 117 NNWFINQRKRNWHNN 131



>gi|4887620|dbj|BAA77823.1|   homeobox gene [Oryza sativa (japonica cultivar-group)]
          Length = 196

 Score =  136 bits (343), Expect = 1e-31
 Identities = 58/75 (77%), Positives = 68/75 (90%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           + ++ D+RE ILRKRRAGKLPGDT + LK WWQ HSKWPYPTE+DKA+LV+ETGLQLKQI
Sbjct: 110 KSRIEDVREEILRKRRAGKLPGDTTTILKQWWQQHSKWPYPTEDDKAKLVEETGLQLKQI 169

Query: 183 SNWFINQRKRNWHSN 227
           +NWFINQRKRNWH+N
Sbjct: 170 NNWFINQRKRNWHNN 184



>gi|14348597|gb|AAK61309.1|AF285148_1   class 2 KNOTTED1-like protein MKN1-3 [Physcomitrella patens]
          Length = 533

 Score =  136 bits (343), Expect = 1e-31
 Identities = 58/76 (76%), Positives = 68/76 (89%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           R ++VD+RE ILRKRRAGKLP  T + LKAWWQAHSKWPYPTE++K R +QETGL+LKQ+
Sbjct: 445 RARIVDVREEILRKRRAGKLPEGTTTVLKAWWQAHSKWPYPTEDEKERRIQETGLELKQV 504

Query: 183 SNWFINQRKRNWHSNP 230
           +NWFINQRKRNWHSNP
Sbjct: 505 NNWFINQRKRNWHSNP 520



>gi|25386223|pir||A96655   hypothetical protein F16P17.16 [imported] - Arabidopsis thaliana
 gi|8493589|gb|AAF75812.1|AC011000_15   Strong similarity to Homeobox Protein HD1 from Brassica napus
           gi|1170191, and contains a lactate/malate dehydrogenase
           PF|00056 domain. [Arabidopsis thaliana]
          Length = 283

 Score =  134 bits (336), Expect = 9e-31
 Identities = 56/75 (74%), Positives = 67/75 (89%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           + ++ D+RE I+RKRRAGKLPGDT + LK WWQ H KWPYPTE+DKA+LV+ETGLQLKQI
Sbjct: 196 KSRIEDVREEIMRKRRAGKLPGDTTTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQI 255

Query: 183 SNWFINQRKRNWHSN 227
           +NWFINQRKRNWH+N
Sbjct: 256 NNWFINQRKRNWHNN 270



>gi|21618231|gb|AAM67281.1|   homeodomain-containing protein HD1, putative [Arabidopsis thaliana]
          Length = 283

 Score =  134 bits (336), Expect = 9e-31
 Identities = 56/75 (74%), Positives = 67/75 (89%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           + ++ D+RE I+RKRRAGKLPGDT + LK WWQ H KWPYPTE+DKA+LV+ETGLQLKQI
Sbjct: 196 KSRIEDVREEIMRKRRAGKLPGDTTTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQI 255

Query: 183 SNWFINQRKRNWHSN 227
           +NWFINQRKRNWH+N
Sbjct: 256 NNWFINQRKRNWHNN 270



>gi|18407708|ref|NP_564805.1|   homeodomain-containing protein HD1, putative; protein id:
           At1g62990.1, supported by cDNA: 106887., supported by
           cDNA: gi_11878229 [Arabidopsis thaliana]
 gi|11878230|gb|AAG40858.1|AF308451_1   homeodomain transcription factor KNAT7 [Arabidopsis thaliana]
          Length = 291

 Score =  134 bits (336), Expect = 9e-31
 Identities = 56/75 (74%), Positives = 67/75 (89%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           + ++ D+RE I+RKRRAGKLPGDT + LK WWQ H KWPYPTE+DKA+LV+ETGLQLKQI
Sbjct: 204 KSRIEDVREEIMRKRRAGKLPGDTTTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQI 263

Query: 183 SNWFINQRKRNWHSN 227
           +NWFINQRKRNWH+N
Sbjct: 264 NNWFINQRKRNWHNN 278



>gi|1170191|sp|P46606|HD1_BRANA   Homeobox protein HD1
 gi|1076449|pir||S47535   homeodomain-containing protein - rape
 gi|453949|emb|CAA82314.1|   homeodomain-containing protein [Brassica napus]
 gi|1090522|prf||2019252A   homeobox protein
          Length = 294

 Score =  134 bits (336), Expect = 9e-31
 Identities = 56/75 (74%), Positives = 67/75 (89%)
 Frame = +3

Query: 3   REKLVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQI 182
           + ++ D+RE I+RKRRAGKLPGDT + LK WWQ H KWPYPTE+DKA+LV+ETGLQLKQI
Sbjct: 207 KSRIEDVREEIMRKRRAGKLPGDTTTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQI 266

Query: 183 SNWFINQRKRNWHSN 227
           +NWFINQRKRNWH+N
Sbjct: 267 NNWFINQRKRNWHNN 281



>gi|20530672|gb|AAM27190.1|AF457121_1   knotted1-like homeodomain protein liguleless4a [Zea mays]
          Length = 151

 Score = 96.7 bits (239), Expect = 2e-19
 Identities = 41/66 (62%), Positives = 47/66 (71%)
 Frame = +3

Query: 21  IREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQISNWFIN 200
           +R   L+KR+ GKLP D  S L  WW  H +WPYPTEEDK RL   TGL  KQI+NWFIN
Sbjct: 52  LRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKVRLAAATGLDPKQINNWFIN 111

Query: 201 QRKRNW 218
           QRKR+W
Sbjct: 112 QRKRHW 117



>gi|4887614|dbj|BAA77820.1|   homeobox gene [Oryza sativa (japonica cultivar-group)]
          Length = 138

 Score = 96.7 bits (239), Expect = 2e-19
 Identities = 41/66 (62%), Positives = 47/66 (71%)
 Frame = +3

Query: 21  IREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQISNWFIN 200
           +R   L+KR+ GKLP D  S L  WW  H +WPYPTEEDK RL   TGL  KQI+NWFIN
Sbjct: 41  LRSEFLKKRKKGKLPKDARSALLEWWNTHYRWPYPTEEDKLRLAARTGLDPKQINNWFIN 100

Query: 201 QRKRNW 218
           QRKR+W
Sbjct: 101 QRKRHW 106



>gi|6016227|sp|P56668|HKLB_MAIZE   Homeobox protein knotted-1 like 11
          Length = 88

 Score = 96.7 bits (239), Expect = 2e-19
 Identities = 41/66 (62%), Positives = 47/66 (71%)
 Frame = +3

Query: 21  IREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQISNWFIN 200
           +R   L+KR+ GKLP D  S L  WW  H +WPYPTEEDK RL   TGL  KQI+NWFIN
Sbjct: 20  LRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKVRLAAATGLDPKQINNWFIN 79

Query: 201 QRKRNW 218
           QRKR+W
Sbjct: 80  QRKRHW 85



>gi|5103725|dbj|BAA79224.1|   knotted1-type homeobox protein OSH6 [Oryza sativa]
          Length = 301

 Score = 96.7 bits (239), Expect = 2e-19
 Identities = 41/66 (62%), Positives = 47/66 (71%)
 Frame = +3

Query: 21  IREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQISNWFIN 200
           +R   L+KR+ GKLP D  S L  WW  H +WPYPTEEDK RL   TGL  KQI+NWFIN
Sbjct: 204 LRSEFLKKRKKGKLPKDARSALLEWWNTHYRWPYPTEEDKLRLAARTGLDPKQINNWFIN 263

Query: 201 QRKRNW 218
           QRKR+W
Sbjct: 264 QRKRHW 269



>gi|11967917|dbj|BAB19772.1|   putative knotted1-type homeobox protein [Oryza sativa (japonica
           cultivar-group)]
 gi|21104563|dbj|BAB93157.1|   putative knotted1-type homeobox protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 301

 Score = 96.7 bits (239), Expect = 2e-19
 Identities = 41/66 (62%), Positives = 47/66 (71%)
 Frame = +3

Query: 21  IREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQISNWFIN 200
           +R   L+KR+ GKLP D  S L  WW  H +WPYPTEEDK RL   TGL  KQI+NWFIN
Sbjct: 204 LRSEFLKKRKKGKLPKDARSALLEWWNTHYRWPYPTEEDKLRLAARTGLDPKQINNWFIN 263

Query: 201 QRKRNW 218
           QRKR+W
Sbjct: 264 QRKRHW 269



>gi|6016220|sp|P56663|HKL5_MAIZE   Homeobox protein knotted-1 like 5
          Length = 85

 Score = 96.3 bits (238), Expect = 2e-19
 Identities = 41/66 (62%), Positives = 47/66 (71%)
 Frame = +3

Query: 21  IREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQISNWFIN 200
           +R   L+KR+ GKLP D  S L  WW  H +WPYPTEEDK RL   TGL  KQI+NWFIN
Sbjct: 17  LRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKVRLAAMTGLDPKQINNWFIN 76

Query: 201 QRKRNW 218
           QRKR+W
Sbjct: 77  QRKRHW 82



>gi|7446248|pir||T02783   probable homeotic protein - rice
 gi|2935573|gb|AAC32817.1|   KNOX class homeodomain protein [Oryza sativa]
 gi|4887610|dbj|BAA77818.1|   homeobox gene [Oryza sativa (japonica cultivar-group)]
 gi|5103729|dbj|BAA79226.1|   knotted1-type homeobox protein OSH71 [Oryza sativa]
          Length = 311

 Score = 96.3 bits (238), Expect = 2e-19
 Identities = 41/66 (62%), Positives = 47/66 (71%)
 Frame = +3

Query: 21  IREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQISNWFIN 200
           +R   L+KR+ GKLP D  S L  WW  H +WPYPTEEDK RL   TGL  KQI+NWFIN
Sbjct: 213 LRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKVRLAAMTGLDPKQINNWFIN 272

Query: 201 QRKRNW 218
           QRKR+W
Sbjct: 273 QRKRHW 278



>gi|6016228|sp|P56669|HLG3_MAIZE   Homeobox protein liguleless 3
          Length = 85

 Score = 95.1 bits (235), Expect = 5e-19
 Identities = 40/66 (60%), Positives = 47/66 (71%)
 Frame = +3

Query: 21  IREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQISNWFIN 200
           +R   L+KR+ GKLP D  + L  WW  H +WPYPTEEDK RL   TGL  KQI+NWFIN
Sbjct: 17  LRSEFLKKRKKGKLPKDARTVLLEWWNTHYRWPYPTEEDKVRLAAMTGLDPKQINNWFIN 76

Query: 201 QRKRNW 218
           QRKR+W
Sbjct: 77  QRKRHW 82



>gi|4240539|gb|AAD13611.1|   knotted class 1 homeodomain protein liguleless3 [Zea mays]
          Length = 295

 Score = 95.1 bits (235), Expect = 5e-19
 Identities = 40/66 (60%), Positives = 47/66 (71%)
 Frame = +3

Query: 21  IREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQISNWFIN 200
           +R   L+KR+ GKLP D  + L  WW  H +WPYPTEEDK RL   TGL  KQI+NWFIN
Sbjct: 198 LRSEFLKKRKKGKLPKDARTVLLEWWNTHYRWPYPTEEDKVRLAAMTGLDPKQINNWFIN 257

Query: 201 QRKRNW 218
           QRKR+W
Sbjct: 258 QRKRHW 263



>gi|4589449|dbj|BAA76750.1|   KN1-type homeobox protein [Nicotiana tabacum]
          Length = 327

 Score = 94.0 bits (232), Expect = 1e-18
 Identities = 40/69 (57%), Positives = 50/69 (72%)
 Frame = +3

Query: 12  LVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQISNW 191
           L  +R+  L+KR+ GKLP D  + L  WW  H +WPYPTEE+K RL + TGL  KQI+NW
Sbjct: 223 LSSLRKEFLKKRKKGKLPKDARTALLEWWNTHYRWPYPTEEEKNRLSEITGLDPKQINNW 282

Query: 192 FINQRKRNW 218
           FINQRKR+W
Sbjct: 283 FINQRKRHW 291



>gi|6942297|gb|AAF32398.1|AF224498_1   KNOTTED-1-like homeobox protein a [Triticum aestivum]
          Length = 362

 Score = 90.9 bits (224), Expect = 9e-18
 Identities = 36/69 (52%), Positives = 49/69 (71%)
 Frame = +3

Query: 12  LVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQISNW 191
           L  +++ + +K++ GKLP D    L +WW+ H KWPYP+E  K  L + TGL LKQI+NW
Sbjct: 257 LSSLKQELSKKKKKGKLPKDARQQLLSWWEMHYKWPYPSESQKVALAESTGLDLKQINNW 316

Query: 192 FINQRKRNW 218
           FINQRKR+W
Sbjct: 317 FINQRKRHW 325



>gi|6942300|gb|AAF32399.1|AF224499_1   KNOTTED-1-like homeobox protein b [Triticum aestivum]
 gi|6942302|gb|AAF32400.1|AF224500_1   KNOTTED-1-like homeobox protein d [Triticum aestivum]
          Length = 363

 Score = 90.9 bits (224), Expect = 9e-18
 Identities = 36/69 (52%), Positives = 49/69 (71%)
 Frame = +3

Query: 12  LVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQISNW 191
           L  +++ + +K++ GKLP D    L +WW+ H KWPYP+E  K  L + TGL LKQI+NW
Sbjct: 258 LSSLKQELSKKKKKGKLPKDARQQLLSWWEMHYKWPYPSESQKVALAESTGLDLKQINNW 317

Query: 192 FINQRKRNW 218
           FINQRKR+W
Sbjct: 318 FINQRKRHW 326



>gi|1171924|sp|P46609|OSH1_ORYSA   Homeobox protein OSH1
 gi|540536|dbj|BAA03959.1|   homeobox protein [Oryza sativa (japonica cultivar-group)]
          Length = 361

 Score = 89.7 bits (221), Expect = 2e-17
 Identities = 36/69 (52%), Positives = 48/69 (69%)
 Frame = +3

Query: 12  LVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQISNW 191
           L  +++ + +K++ GKLP D    L  WW+ H KWPYP+E  K  L + TGL LKQI+NW
Sbjct: 255 LSSLKQELSKKKKKGKLPKDARQQLLNWWELHYKWPYPSESQKVALAESTGLDLKQINNW 314

Query: 192 FINQRKRNW 218
           FINQRKR+W
Sbjct: 315 FINQRKRHW 323



>gi|478420|pir||JQ2379   homeobox 1 protein OSH1 - rice
          Length = 361

 Score = 89.7 bits (221), Expect = 2e-17
 Identities = 36/69 (52%), Positives = 48/69 (69%)
 Frame = +3

Query: 12  LVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQISNW 191
           L  +++ + +K++ GKLP D    L  WW+ H KWPYP+E  K  L + TGL LKQI+NW
Sbjct: 255 LSSLKQELSKKKKKGKLPKDARQQLLNWWELHYKWPYPSESQKVALAESTGLDLKQINNW 314

Query: 192 FINQRKRNW 218
           FINQRKR+W
Sbjct: 315 FINQRKRHW 323



>gi|3327275|dbj|BAA31701.1|   PKn3 [Ipomoea nil]
          Length = 358

 Score = 89.7 bits (221), Expect = 2e-17
 Identities = 38/69 (55%), Positives = 49/69 (71%)
 Frame = +3

Query: 12  LVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQISNW 191
           L  +R+  L+KR+ GKLP D    L  WW +H +WPY TEE+K +L + TGL  KQI+NW
Sbjct: 255 LSSLRKEFLKKRKKGKLPKDARVALLDWWNSHYRWPYTTEEEKNKLSEATGLDQKQINNW 314

Query: 192 FINQRKRNW 218
           FINQRKR+W
Sbjct: 315 FINQRKRHW 323



>gi|21431769|sp|P46640|HKL2_ARATH   Homeobox protein knotted-1 like 2 (KNAT2) (ATK1)
 gi|606952|gb|AAA67882.1|   knotted-like homeobox protein
          Length = 310

 Score = 89.4 bits (220), Expect = 3e-17
 Identities = 36/60 (60%), Positives = 44/60 (73%)
 Frame = +3

Query: 39  RKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQISNWFINQRKRNW 218
           +K++ GKLP +    L  WW  H+KWPYPTE DK  L +ETGL  KQI+NWFINQRKR+W
Sbjct: 230 KKKKKGKLPREARQALLDWWNVHNKWPYPTEGDKISLAEETGLDQKQINNWFINQRKRHW 289



>gi|15223167|ref|NP_177208.1|   homeotic protein (ATK1); protein id: At1g70510.1 [Arabidopsis
           thaliana]
 gi|25386225|pir||A96729   homeotic protein (ATK1), 26548-32058 [imported] - Arabidopsis
           thaliana
 gi|12325041|gb|AAG52468.1|AC010796_7   homeotic protein (ATK1); 26548-32058 [Arabidopsis thaliana]
          Length = 311

 Score = 89.4 bits (220), Expect = 3e-17
 Identities = 36/60 (60%), Positives = 44/60 (73%)
 Frame = +3

Query: 39  RKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQISNWFINQRKRNW 218
           +K++ GKLP +    L  WW  H+KWPYPTE DK  L +ETGL  KQI+NWFINQRKR+W
Sbjct: 231 KKKKKGKLPREARQALLDWWNVHNKWPYPTEGDKISLAEETGLDQKQINNWFINQRKRHW 290



>gi|7446239|pir||S57818   homeotic protein ATK1 - Arabidopsis thaliana
 gi|984046|emb|CAA57122.1|   ATK1 [Arabidopsis thaliana]
 gi|984048|emb|CAA57121.1|   ATK1 [Arabidopsis thaliana]
          Length = 311

 Score = 89.4 bits (220), Expect = 3e-17
 Identities = 36/60 (60%), Positives = 44/60 (73%)
 Frame = +3

Query: 39  RKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQISNWFINQRKRNW 218
           +K++ GKLP +    L  WW  H+KWPYPTE DK  L +ETGL  KQI+NWFINQRKR+W
Sbjct: 230 KKKKKGKLPREARQALLDWWNVHNKWPYPTEGDKIALAEETGLDQKQINNWFINQRKRHW 289



>gi|3024086|sp|Q43484|KNX3_HORVU   Homeobox protein KNOX3 (Hooded protein)
 gi|2130040|pir||S58871   homeotic protein Knox3 - barley
 gi|793847|emb|CAA58503.1|   Knox3 [Hordeum vulgare]
          Length = 364

 Score = 89.4 bits (220), Expect = 3e-17
 Identities = 35/69 (50%), Positives = 49/69 (71%)
 Frame = +3

Query: 12  LVDIREGILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQISNW 191
           L  +++ + +K++ GKLP +    L +WW+ H KWPYP+E  K  L + TGL LKQI+NW
Sbjct: 259 LSSLKQELSKKKKKGKLPKEARQQLLSWWEMHYKWPYPSESQKVALAESTGLDLKQINNW 318

Query: 192 FINQRKRNW 218
           FINQRKR+W
Sbjct: 319 FINQRKRHW 327






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Dec 9, 2002  8:40 PM
  Number of letters in database: 397,579,747
  Number of sequences in database:  1,247,039
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 420,468,023
Number of Sequences: 1247039
Number of extensions: 8678584
Number of successful extensions: 23888
Number of sequences better than 10.0: 842
Number of HSP's better than 10.0 without gapping: 23114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23843
length of database: 397,579,747
effective HSP length: 115
effective length of database: 254,170,262
effective search space used: 18808599388
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)