RID=1039725376-023392-18651,

RID=1039725376-023392-18651, BLASTX 2.2.5 [Nov-16-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
RID: 1039725376-023392-18651
Query= (528 letters)
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 1,247,039 sequences; 397,579,747 total letters
If you have any problems or questions with the results of this search
please refer to the BLAST FAQs
Taxonomy reports
Distribution of 55 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|21644698|dbj|BAC01254.1|  P0019E03.13 [Oryza sativa (japo...   245   2e-64 
gi|21240652|gb|AAM44363.1|  hypothetical protein [Dictyostel...    35   0.38  
gi|21299378|gb|EAA11523.1|  agCP6591 [Anopheles gambiae str....    35   0.64  
gi|17558288|ref|NP_505566.1|  AdaPTin or adaptin-related pro...    35   0.64  
gi|21295712|gb|EAA07857.1|  agCP1631 [Anopheles gambiae str....    34   1.1   
gi|9631431|ref|NP_048304.1|  ORF MSV234 hypthetical protein ...    34   1.1   
gi|24641054|ref|NP_572640.1|  CG9817-PA [Drosophila melanoga...    34   1.1   
gi|9963932|gb|AAG09771.1|AF243528_1  cell envelope proteinas...    33   1.4   
gi|4502603|ref|NP_003646.1|  chromobox homolog 4 (Pc class h...    33   1.4   
gi|21296201|gb|EAA08346.1|  agCP2923 [Anopheles gambiae str....    33   1.4   
gi|4996551|dbj|BAA78527.1|  serine repeat antigen [Plasmodiu...    32   3.2   
gi|123530|sp|P04929|HRPX_PLALO  HISTIDINE-RICH GLYCOPROTEIN ...    32   4.2   
gi|17543630|ref|NP_502416.1|  Exchange factor for ARF6 (90.6...    32   4.2   
gi|22980307|gb|ZP_00026015.1|  hypothetical protein [Ralston...    32   4.2   
gi|22999308|gb|ZP_00043297.1|  hypothetical protein [Magneto...    32   4.2   
gi|17543632|ref|NP_502417.1|  Exchange factor for ARF6 (90.5...    32   4.2   
gi|7511358|pir||T28037  hypothetical protein ZK849.4 - Caeno...    32   5.4   
gi|23509629|ref|NP_702296.1|  hypothetical protein [Plasmodi...    32   5.4   
gi|15238344|ref|NP_198349.1|  putative protein; protein id: ...    32   5.4   
gi|17862194|gb|AAL39574.1|  LD13887p [Drosophila melanogaster]     32   5.4   
gi|21069303|gb|AAM33925.1|AF477082_1  envelope glycoprotein ...    32   5.4   
gi|17511107|ref|NP_493479.1|  Predicted CDS, putative plasma...    32   5.4   
gi|1778844|gb|AAB40929.1|  LimA [Dictyostelium discoideum]         32   5.4   
gi|24661662|ref|NP_648321.2|  CG32043-PA [Drosophila melanog...    32   5.4   
gi|7487858|pir||T02022  hypothetical protein T9E19.1 - Arabi...    32   5.4   
gi|7487899|pir||T01039  hypothetical protein YUP8H12R.22 - A...    32   5.4   
gi|23131013|gb|ZP_00112798.1|  hypothetical protein [Prochlo...    31   7.1   
gi|25518580|pir||E86402  hypothetical protein F28L5.2 - Arab...    31   7.1   
gi|549440|sp|P35941|VV_PHODV  Nonstructural protein V >gi|47...    31   7.1   
gi|15832166|ref|NP_310939.1|  hypothetical protein [Escheric...    31   7.1   
gi|419441|pir||JQ1610  nonstructural protein V - phocine dis...    31   7.1   
gi|24643074|ref|NP_573311.1|  CG15040-PA [Drosophila melanog...    31   7.1   
gi|15802585|ref|NP_288612.1|  orf, hypothetical protein [Esc...    31   7.1   
gi|15217714|ref|NP_174099.1|  hypothetical protein; protein ...    31   7.1   
gi|548843|sp|P35939|RRPP_PHODV  RNA polymerase alpha subunit...    31   7.1   
gi|7429151|pir||JQ1563  polymerase-associated nucleocapsid p...    31   7.1   
gi|5668789|gb|AAD46015.1|AC007894_13  F21H2.5 [Arabidopsis t...    31   7.1   
gi|19856246|sp|P15205|MAPB_RAT  Microtubule-associated prote...    31   9.2   
gi|1083716|pir||A56577  microtubule-associated protein MAP 1...    31   9.2   
gi|15228375|ref|NP_187692.1|  putative RING zinc finger prot...    31   9.2   
gi|538622|pir||S06017  neuraxin - rat >gi|57827|emb|CAA34620...    31   9.2   
gi|22041133|ref|XP_087259.5|  similar to evidence:NAS~hypoth...    31   9.2   
gi|15791035|ref|NP_280859.1|  tRNA intron endonuclease; EndA...    31   9.2   
gi|6958708|gb|AAF32727.1|AF138402_1  envelope glycoprotein [...    31   9.2   
gi|627071|pir||A54523  histidine-rich protein - Plasmodium l...    31   9.2   
gi|21291077|gb|EAA03222.1|  agCP1893 [Anopheles gambiae str....    31   9.2   

Alignments


>gi|21644698|dbj|BAC01254.1|   P0019E03.13 [Oryza sativa (japonica cultivar-group)]
          Length = 444

 Score =  245 bits (626), Expect = 2e-64
 Identities = 128/158 (81%), Positives = 129/158 (81%)
 Frame = +2

Query: 53  GADTKSIILDDGNSSHGSKSEDEKVDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQESR 232
           GADTKSIILDDGNSSHGSKSEDEKVDL                            VQESR
Sbjct: 234 GADTKSIILDDGNSSHGSKSEDEKVDLGSITESPSEGETSGEKSGRSESEENGNGVQESR 293

Query: 233 EPTIRSEGECGGFISDGVVEHEIGVVDEHTPEDGVSALSEEVLKPDVKAEDNTASASATS 412
           EPTIRSEGECG FISDGVVEHEIGVVDEHTPE+GVSALSEEVLKPDVKAEDNTASASATS
Sbjct: 294 EPTIRSEGECGDFISDGVVEHEIGVVDEHTPENGVSALSEEVLKPDVKAEDNTASASATS 353

Query: 413 HLNDLEAPPVEEPANGNISPLSQEPLDLTIYSSAAELE 526
           HLNDLEAPPVEEPANGNISPLSQEPLDLTIYSSAAELE
Sbjct: 354 HLNDLEAPPVEEPANGNISPLSQEPLDLTIYSSAAELE 391



>gi|21240652|gb|AAM44363.1|   hypothetical protein [Dictyostelium discoideum]
          Length = 233

 Score = 35.4 bits (80), Expect = 0.38
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -2

Query: 137 NPDQ-PSRPHFWIHARNSHHQELWILYLHPHRHPFHCHYRYHSHP 6
           NP+  P  PH   H  + HH        H H H  H H+ +H HP
Sbjct: 59  NPNNNPHHPHHLHHHHHHHHHH------HHHHHHHHHHHHHHHHP 97




 Score = 33.1 bits (74), Expect = 1.9
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -2

Query: 137 NPDQPSRPHFWIHARNSHHQELWILYLHPHRHPFHCHYRYHSH 9
           +P     PH   H  + HH      + H H H  H H+ +H H
Sbjct: 103 HPHHHHHPHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH 145




 Score = 33.1 bits (74), Expect = 1.9
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -2

Query: 137 NPDQPSR-PHFWIHARNSHHQELWILYLHPHRHPFHCHYRYHSHP 6
           NP  P+  PH   H  + HH      + H H H  H H+ +  HP
Sbjct: 56  NPHNPNNNPHHPHHLHHHHHHHHHHHHHHHHHHHHHHHHHHPHHP 100




 Score = 32.3 bits (72), Expect = 3.2
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -2

Query: 137 NPDQPSRPHFWIHARNSHHQELWILYLHPHRHPFHCHYRYHSH 9
           NP  P   H   H  + HH      + H H H  H H+ +H H
Sbjct: 63  NPHHPHHLHHHHHHHHHHHHH----HHHHHHHHHHHHHPHHPH 101




 Score = 31.6 bits (70), Expect = 5.4
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -2

Query: 113 HFWIHARNSHHQELWILYLHPHRHPFHCHYRYHSHP 6
           H   H  + HH      + H H H  H H+ +H HP
Sbjct: 120 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHP 155




 Score = 31.2 bits (69), Expect = 7.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 113 HFWIHARNSHHQELWILYLHPHRHPFHCHYRYHSH 9
           H   H  + HH      + H H HP H H+ +H H
Sbjct: 86  HHHHHHHHHHHPHHPHHHPHHHHHPHHHHHHHHHH 120




 Score = 31.2 bits (69), Expect = 7.1
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 137 NPDQPSR-PHFWIHARNSHHQELWILYLHPHRHPFHCHYRYHSH 9
           NP  P+  PH   +  N+ H    + + H H H  H H+ +H H
Sbjct: 46  NPHNPNNNPHNPHNPNNNPHHPHHLHHHHHHHHHHHHHHHHHHH 89




 Score = 30.8 bits (68), Expect = 9.2
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = -2

Query: 137 NPDQPSR-PHFWIHARNSHHQELWILYLHPHRHPFHCHYRYHSH 9
           +P  P   PH   H  + HH      + H H H  H H+ +H H
Sbjct: 96  HPHHPHHHPHHHHHPHHHHHHH----HHHHHHHHHHHHHHHHHH 135



>gi|21299378|gb|EAA11523.1|   agCP6591 [Anopheles gambiae str. PEST]
          Length = 307

 Score = 34.7 bits (78), Expect = 0.64
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -2

Query: 101 HARNSHHQELWILYLHPHRHPFHCHYRYH---SHPL 3
           H  +  HQ+L   + HPH HP H H+ +H   +HPL
Sbjct: 3   HHPHHPHQQLPPHHHHPHHHPHHHHHHHHQPGTHPL 38



>gi|17558288|ref|NP_505566.1|   AdaPTin or adaptin-related protein APT-10 (apt-10) [Caenorhabditis
            elegans]
 gi|7496627|pir||T19536   hypothetical protein C27H6.1 - Caenorhabditis elegans
 gi|3874561|emb|CAB02795.1|   C. elegans apt-10 protein (corresponding sequence C27H6.1)
            [Caenorhabditis elegans]
          Length = 1657

 Score = 34.7 bits (78), Expect = 0.64
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = +2

Query: 239  TIRSEGECGGFISDGVVEHEIGVVDEHTPEDGVSALSEEVLKPDVKAEDNTASA-SATSH 415
            T+ S  +   F++D     +  ++DE      V A+ E V     KAE   A+A +    
Sbjct: 975  TVASSEKRSSFVADPFAPQQAALIDESYDPFAVVAVEEVVAMAKAKAEQAAANAENEDDF 1034

Query: 416  LNDLEAPPVEEPANGNISPLSQE 484
             N  ++P +  P     SP+SQ+
Sbjct: 1035 YNGRQSPTLSTPTPEGGSPISQQ 1057



>gi|21295712|gb|EAA07857.1|   agCP1631 [Anopheles gambiae str. PEST]
          Length = 208

 Score = 33.9 bits (76), Expect = 1.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 104 IHARNSHHQELWILYLHPHRHPFHCHYRYHSH 9
           +H  + HH      +LHPH HP   HY +H H
Sbjct: 173 VHYPSHHHHHP---HLHPHHHPHGQHYHHHHH 201



>gi|9631431|ref|NP_048304.1|   ORF MSV234 hypthetical protein [Melanoplus sanguinipes
           entomopoxvirus]
 gi|11361205|pir||T28394   hypothetical protein MSV234 [imported] - Melanoplus sanguinipes
           entomopoxvirus
 gi|4049784|gb|AAC97744.1|   ORF MSV234 hypthetical protein [Melanoplus sanguinipes
           entomopoxvirus]
          Length = 117

 Score = 33.9 bits (76), Expect = 1.1
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -2

Query: 113 HFWIHARNSHHQELWI---LYLHPHRHPFHCHYRYHSH 9
           H + H  + HH  ++     Y H H H FH ++ +HS+
Sbjct: 47  HVYFHLHHHHHFHVYFHLHSYFHFHHHHFHVYFHFHSY 84



>gi|24641054|ref|NP_572640.1|   CG9817-PA [Drosophila melanogaster]
 gi|7291175|gb|AAF46608.1|   CG9817-PA [Drosophila melanogaster]
          Length = 2090

 Score = 33.9 bits (76), Expect = 1.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 113  HFWIHARNSHHQELWILYLHPHRHPFHCHYRYHSH 9
            H  +HA  +HH      ++H H HP H H   H H
Sbjct: 1153 HPHVHAHQAHHS-----HVHAHAHPHHAHSHAHPH 1182



>gi|9963932|gb|AAG09771.1|AF243528_1   cell envelope proteinase [Streptococcus thermophilus]
          Length = 1585

 Score = 33.5 bits (75), Expect = 1.4
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
 Frame = +2

Query: 275  SDGVVEHEIGVVDEHTPE-DGVSALSEEVLKPDVKAEDNTASASAT-----SHLNDLEAP 436
            S   V+  + V+     E DGV+  + +  +P   A D     + T     S + D++AP
Sbjct: 1447 SQASVDQALAVLTSAQAELDGVATSTNDAKEPANTATDKKDEGTVTPPPIDSEIVDVQAP 1506

Query: 437  PVEEPANGNISPLSQEP 487
            PV++  N    P+ Q+P
Sbjct: 1507 PVKDTGNSEHVPIGQKP 1523



>gi|4502603|ref|NP_003646.1|   chromobox homolog 4 (Pc class homolog, Drosophila); chromobox
           homolog 4 (Drosophila Pc class) [Homo sapiens]
 gi|12585199|sp|O00257|CBX4_HUMAN   Chromobox protein homolog 4 (Polycomb 2 homolog) (Pc2) (hPc2)
 gi|2317723|gb|AAB80718.1|   Polycomb 2 homolog [Homo sapiens]
          Length = 558

 Score = 33.5 bits (75), Expect = 1.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 107 WIHARNSHHQELWILYLHPHRHPFHCHYRYHSH 9
           W  ARN+H         HPH HP H H+ +H H
Sbjct: 369 WDPARNTHPPSH-----HPHPHPHHHHHHHHHH 396



>gi|21296201|gb|EAA08346.1|   agCP2923 [Anopheles gambiae str. PEST]
          Length = 712

 Score = 33.5 bits (75), Expect = 1.4
 Identities = 29/90 (32%), Positives = 34/90 (37%), Gaps = 18/90 (20%)
 Frame = +2

Query: 311 DEHTPEDGVSALSEEVLKP-DVKAEDNTASASATSHLNDLE-----------------AP 436
           DE T E       EE  KP D  A+ N +   A   L DL+                  P
Sbjct: 353 DEQTAEPVQPTAQEEATKPSDSAAQPNESKFEAQEVLEDLQNLENMCDELLLEAAHTQPP 412

Query: 437 PVEEPANGNISPLSQEPLDLTIYSSAAELE 526
           P E  ANG I P    P   T+ S  A+LE
Sbjct: 413 PSEAGANGAIEPPPSSPPVKTVSSVRAKLE 442



>gi|4996551|dbj|BAA78527.1|   serine repeat antigen [Plasmodium falciparum]
          Length = 249

 Score = 32.3 bits (72), Expect = 3.2
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = -1

Query: 492 SSGSCERGDIFPLAGSSTGGASRSLRCDVAEAEAVLSSAFTSGFNTSSERALTPSSG 322
           SS    RGD  P++GSS+  +S S     + + +  SS+ +S  ++SS     P++G
Sbjct: 172 SSTGTVRGDTEPISGSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSESLPANG 228



>gi|123530|sp|P04929|HRPX_PLALO   HISTIDINE-RICH GLYCOPROTEIN PRECURSOR
 gi|72400|pir||KGZQHL   histidine-rich glycoprotein precursor - Plasmodium lophurae
 gi|9999|emb|CAA25698.1|   histidine-rich protein [Plasmodium lophurae]
 gi|224316|prf||1101401A   protein,His rich
          Length = 351

 Score = 32.0 bits (71), Expect = 4.2
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -2

Query: 125 PSRPHFWIHARNSHHQELWILYLHPHRHPFHCHYRYHSH 9
           P   H   HA + HH      + H H H  H H+ +H H
Sbjct: 194 PHHHHHHHHAPHHHHHHHHAPHHHHHHHHGHHHHHHHHH 232




 Score = 31.6 bits (70), Expect = 5.4
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = -2

Query: 125 PSRPHFWIHARNSHHQELWILYLHPHRH--PFHCHYRYHSH 9
           P   H   HA + HH      + H H H  P H H+ +H H
Sbjct: 184 PHHHHHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHHHHHGH 224




 Score = 30.8 bits (68), Expect = 9.2
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -2

Query: 125 PSRPHFWIHARNSHHQELWILYLHPHRHPFHCHYRYHSH 9
           P   H   HA + HH      + H H H  H H+ +H H
Sbjct: 204 PHHHHHHHHAPHHHHHHHHGHHHHHHHHHGHHHHHHHHH 242



>gi|17543630|ref|NP_502416.1|   Exchange factor for ARF6 (90.6 kD) [Caenorhabditis elegans]
 gi|15718327|emb|CAC70120.1|   Hypothetical protein Y55D9A.1b [Caenorhabditis elegans]
          Length = 818

 Score = 32.0 bits (71), Expect = 4.2
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
 Frame = +2

Query: 239 TIRSEGECGGFISDGVVEHEIGVVDEHTPEDGVSALSEEVLK----PDVKAEDNTASASA 406
           TI   G    +  DG+  H      + TP+ G  +L +++ +    P+  A +++ASAS 
Sbjct: 283 TIDGSGVSNHYDQDGMFSHVYYSTQDTTPKHGSPSLRKQIFESRTTPNTAASNSSASASP 342

Query: 407 TSHLNDLEAPPVEEPANGNISPLSQEPLDL 496
           + H     A      A G +S  S E  +L
Sbjct: 343 SLH-----ATSESRGATGGVSLRSAESSNL 367



>gi|22980307|gb|ZP_00026015.1|   hypothetical protein [Ralstonia metallidurans]
          Length = 398

 Score = 32.0 bits (71), Expect = 4.2
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = -2

Query: 62  YLHPHRH--PFHCHYRYHSHP 6
           Y HPHR      CHYR+H+HP
Sbjct: 270 YYHPHRTGGTLMCHYRHHAHP 290



>gi|22999308|gb|ZP_00043297.1|   hypothetical protein [Magnetococcus sp. MC-1]
          Length = 629

 Score = 32.0 bits (71), Expect = 4.2
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +2

Query: 284 VVEHEIGVVDEHTPEDGVSALSEEVLKPDVKAEDNTASASATSHLNDLEAPPVEEPANGN 463
           ++ HE  + ++HT E+ + + S    K   +A    A A+A     +   P V++P+   
Sbjct: 505 MIRHEQAMSEQHTTEEPLDSTSAITDKQRAEAAAKAADAAAAPPRQEAATPAVDQPSPDA 564

Query: 464 ISP 472
           I P
Sbjct: 565 IKP 567



>gi|17543632|ref|NP_502417.1|   Exchange factor for ARF6 (90.5 kD) [Caenorhabditis elegans]
 gi|7510216|pir||T27189   hypothetical protein Y55D9A.1 - Caenorhabditis elegans
 gi|3881116|emb|CAA21701.1|   Hypothetical protein Y55D9A.1a [Caenorhabditis elegans]
          Length = 816

 Score = 32.0 bits (71), Expect = 4.2
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
 Frame = +2

Query: 239 TIRSEGECGGFISDGVVEHEIGVVDEHTPEDGVSALSEEVLK----PDVKAEDNTASASA 406
           TI   G    +  DG+  H      + TP+ G  +L +++ +    P+  A +++ASAS 
Sbjct: 281 TIDGSGVSNHYDQDGMFSHVYYSTQDTTPKHGSPSLRKQIFESRTTPNTAASNSSASASP 340

Query: 407 TSHLNDLEAPPVEEPANGNISPLSQEPLDL 496
           + H     A      A G +S  S E  +L
Sbjct: 341 SLH-----ATSESRGATGGVSLRSAESSNL 365



>gi|7511358|pir||T28037   hypothetical protein ZK849.4 - Caenorhabditis elegans
          Length = 530

 Score = 31.6 bits (70), Expect = 5.4
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +2

Query: 293 HEIGVVDEHTPEDGVSALSEEVLKPDVKAEDNTASASATSHLNDLEAPPVEEPANGNISP 472
           HE+G   +    +G  ALS  +  P+ +A+++       S + D EA P   PA  N +P
Sbjct: 449 HEVGAQADPAEANGAQALSPVLPNPNERADEH-----GHSPVIDNEAQPSPPPAEANRAP 503

Query: 473 L-SQEP 487
           + +Q+P
Sbjct: 504 IPNQQP 509



>gi|23509629|ref|NP_702296.1|   hypothetical protein [Plasmodium falciparum 3D7]
 gi|23497477|gb|AAN37020.1|AE014822_55   hypothetical protein [Plasmodium falciparum 3D7]
          Length = 3384

 Score = 31.6 bits (70), Expect = 5.4
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -2

Query: 137 NPDQPSRPHFWIHARNSHH--QELWILYLHPHRHPFHCHYRYHSH 9
           N D     H   H+ +++H        + + + H +HCH+ YH+H
Sbjct: 576 NSDHNCHSHHNYHSHHNYHCHHNYHCHHNYHNHHNYHCHHNYHNH 620



>gi|15238344|ref|NP_198349.1|   putative protein; protein id: At5g34990.1 [Arabidopsis thaliana]
          Length = 664

 Score = 31.6 bits (70), Expect = 5.4
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
 Frame = +2

Query: 296 EIGVVDEHTPEDGVSALSEEVLK-----PDVKAEDNTASASATSHLNDLEAPPVEEPANG 460
           E G+V  HT  D ++    E++      P   A++    ASA++  N  E+    EP++G
Sbjct: 406 EPGLVGTHTGADEIADADIEMVDNPSGLPSTSAQEEARDASASTEANGNESEETYEPSDG 465

Query: 461 NIS 469
           +I+
Sbjct: 466 DIA 468



>gi|17862194|gb|AAL39574.1|   LD13887p [Drosophila melanogaster]
          Length = 479

 Score = 31.6 bits (70), Expect = 5.4
 Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
 Frame = -2

Query: 125 PSRPHFWIHARNSHH---QELWILYLHPHRHPFHCHYRYHSHP 6
           P  PH   H +  HH         Y H H HP   H  Y+ HP
Sbjct: 382 PPSPHSHPHHQTGHHGLPHAHHFAYAHGHPHPQQHHPHYYPHP 424



>gi|21069303|gb|AAM33925.1|AF477082_1   envelope glycoprotein [Human immunodeficiency virus type 1]
          Length = 177

 Score = 31.6 bits (70), Expect = 5.4
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 457 WKYISSFTGTTGPDNLQFSCRI 522
           WK  S+ TGTTG D +Q  CRI
Sbjct: 143 WKDDSALTGTTGNDTIQLPCRI 164



>gi|17511107|ref|NP_493479.1|   Predicted CDS, putative plasma membrane membrane protein family
           member, with at least 4 transmembrane domains, of
           bilaterial origin [Caenorhabditis elegans]
 gi|14917062|sp|O18303|YHS4_CAEEL   Hypothetical protein ZK849.4 in chromosome I
 gi|7160773|emb|CAB05027.2|   Hypothetical protein ZK849.4 [Caenorhabditis elegans]
          Length = 602

 Score = 31.6 bits (70), Expect = 5.4
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +2

Query: 293 HEIGVVDEHTPEDGVSALSEEVLKPDVKAEDNTASASATSHLNDLEAPPVEEPANGNISP 472
           HE+G   +    +G  ALS  +  P+ +A+++       S + D EA P   PA  N +P
Sbjct: 521 HEVGAQADPAEANGAQALSPVLPNPNERADEH-----GHSPVIDNEAQPSPPPAEANRAP 575

Query: 473 L-SQEP 487
           + +Q+P
Sbjct: 576 IPNQQP 581



>gi|1778844|gb|AAB40929.1|   LimA [Dictyostelium discoideum]
          Length = 623

 Score = 31.6 bits (70), Expect = 5.4
 Identities = 21/67 (31%), Positives = 29/67 (43%)
 Frame = -2

Query: 233 PWTPEHRFHSPLIQSVQTSHLRSLLLKVIQ*LNPDQPSRPHFWIHARNSHHQELWILYLH 54
           P    H  HS  I S+Q  H+ +  +        D P + H   + +NSHHQ       H
Sbjct: 233 PLQHHHHTHSQPI-SIQHQHIENKHI--------DSPIQHHVSHNIKNSHHQ-------H 276

Query: 53  PHRHPFH 33
            H+HP H
Sbjct: 277 QHQHPSH 283



>gi|24661662|ref|NP_648321.2|   CG32043-PA [Drosophila melanogaster]
 gi|24661666|ref|NP_729500.1|   CG32043-PB [Drosophila melanogaster]
 gi|23093828|gb|AAF50261.2|   CG32043-PA [Drosophila melanogaster]
 gi|23093829|gb|AAF50260.2|   CG32043-PB [Drosophila melanogaster]
          Length = 783

 Score = 31.6 bits (70), Expect = 5.4
 Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
 Frame = -2

Query: 125 PSRPHFWIHARNSHH---QELWILYLHPHRHPFHCHYRYHSHP 6
           P  PH   H +  HH         Y H H HP   H  Y+ HP
Sbjct: 686 PPSPHSHPHHQTGHHGLPHAHHFAYAHGHPHPQQHHPHYYPHP 728



>gi|7487858|pir||T02022   hypothetical protein T9E19.1 - Arabidopsis thaliana
 gi|3859612|gb|AAC72877.1|   T9E19.1 gene product [Arabidopsis thaliana]
          Length = 543

 Score = 31.6 bits (70), Expect = 5.4
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
 Frame = +2

Query: 296 EIGVVDEHTPEDGVSALSEEVLK-----PDVKAEDNTASASATSHLNDLEAPPVEEPANG 460
           E G+V  HT  D ++    E++      P   A++    ASA++  N  E+    EP++G
Sbjct: 262 EPGLVGTHTGADEIADADIEMVDNPSGLPSTSAQEEARDASASTEANGNESEETYEPSDG 321

Query: 461 NIS 469
           +I+
Sbjct: 322 DIA 324



>gi|7487899|pir||T01039   hypothetical protein YUP8H12R.22 - Arabidopsis thaliana
 gi|3152564|gb|AAC17045.1|   Contains similarity to homeobox protein 8 gb|X16849 from Xenopus
           laevis. [Arabidopsis thaliana]
          Length = 147

 Score = 31.6 bits (70), Expect = 5.4
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 140 LNPDQPSRPHFWIHARNSHHQELWILYLHPHRHPFHCHYRYHSH 9
           L+   PS P    H R+ HH      Y   HRH + C + +H H
Sbjct: 96  LSSPSPSAPPLLSHYRHRHHHCYHHYY---HRHRYCCRHHHHRH 136



>gi|23131013|gb|ZP_00112798.1|   hypothetical protein [Prochlorococcus marinus str. MIT 9313]
          Length = 315

 Score = 31.2 bits (69), Expect = 7.1
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
 Frame = +2

Query: 227 SREPTIRSEGECGGFIS---DGVVEHEIGVVDEHTPEDGVSALSEE---VLKPDVKAEDN 388
           +R  T+R +G   G  +   +G   +E  VVD++  +DG     EE   + K + K E+ 
Sbjct: 144 TRTTTVRPDGSVQGTETKNANGTSHYENDVVDQYKDKDGNIITKEEYDNLNKQEEKEEEP 203

Query: 389 TASASATSHLNDLEAPPVEEPANG---NISPLSQ 481
               S   + ++ E    EEP  G   +I+P S+
Sbjct: 204 EKDESNDDNQSETEGNESEEPEGGEGDDITPESE 237



>gi|25518580|pir||E86402   hypothetical protein F28L5.2 - Arabidopsis thaliana
 gi|12320891|gb|AAG50582.1|AC079280_13   hypothetical protein [Arabidopsis thaliana]
          Length = 1198

 Score = 31.2 bits (69), Expect = 7.1
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
 Frame = +2

Query: 296 EIGVVDEHTPEDGVSALSEEVLK-----PDVKAEDNTASASATSHLNDLEAPPVEEPANG 460
           E G+V  HT  D ++    E++      P   A++    ASA++  N  E+  + EP++G
Sbjct: 717 EPGLVGTHTGADEIADADIEMVDNPSGLPSTSAQEEARDASASTEANGSESEEIYEPSDG 776

Query: 461 N 463
           +
Sbjct: 777 D 777



>gi|549440|sp|P35941|VV_PHODV   Nonstructural protein V
 gi|476467|pir||JQ1565   nonstructural protein V - phocine distemper virus (strain
           Ulster/88)
 gi|60637|emb|CAA46485.1|   phosphoprotein V protein [Morbillivirus]
          Length = 299

 Score = 31.2 bits (69), Expect = 7.1
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +2

Query: 218 VQESREPTIRSEGECGGFISDGVVEHEI--GVVDEHTPEDGVSALSEEVLKPDVKAEDNT 391
           V   R+ T +S  E G   + GV E EI   + + HTP    +++S+ + +     EDNT
Sbjct: 32  VSNIRDQTYKSSKESG---TTGVQEEEITQNIDESHTPTKRSNSVSDVLQEDQRGREDNT 88

Query: 392 ASASATSHLND 424
           A   A   + +
Sbjct: 89  APVEAKDRIEE 99



>gi|15832166|ref|NP_310939.1|   hypothetical protein [Escherichia coli O157:H7]
 gi|25391044|pir||H90992   hypothetical protein ECs2912 [imported] - Escherichia coli  (strain
           O157:H7, substrain RIMD 0509952)
 gi|13362381|dbj|BAB36335.1|   hypothetical protein [Escherichia coli O157:H7]
          Length = 279

 Score = 31.2 bits (69), Expect = 7.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 110 FWIHARNSHHQELWILYLHPHRHPFHCHYRYHSH 9
           FW+  R    +  W+  +H H H  H H++ H H
Sbjct: 103 FWMFWRTWRGERNWLENMHEHHHHDHEHHQDHDH 136



>gi|419441|pir||JQ1610   nonstructural protein V - phocine distemper virus
          Length = 299

 Score = 31.2 bits (69), Expect = 7.1
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +2

Query: 218 VQESREPTIRSEGECGGFISDGVVEHEI--GVVDEHTPEDGVSALSEEVLKPDVKAEDNT 391
           V   R+ T +S  E G   + GV E EI   + + HTP    +++S+ + +     EDNT
Sbjct: 32  VSNIRDQTYKSSKESG---TTGVQEEEITQNIDESHTPTKRSNSVSDVLQEDQRGREDNT 88

Query: 392 ASASATSHLND 424
           A   A   + +
Sbjct: 89  APVEAKDRIEE 99



>gi|24643074|ref|NP_573311.1|   CG15040-PA [Drosophila melanogaster]
 gi|7293488|gb|AAF48863.1|   CG15040-PA [Drosophila melanogaster]
          Length = 1895

 Score = 31.2 bits (69), Expect = 7.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 128 QPSRPHFWIHARNSHHQELWILYLHPHRHPFHCHYRYHSHP 6
           +P  P  + H  +  H      + HPH HP H H   HSHP
Sbjct: 688 RPPHPKAFPHPNSPAHHHSPTPHPHPHLHP-HPHTYAHSHP 727



>gi|15802585|ref|NP_288612.1|   orf, hypothetical protein [Escherichia coli O157:H7 EDL933]
 gi|25497181|pir||C85838   hypothetical protein yohM [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12516319|gb|AAG57167.1|AE005437_2   orf, hypothetical protein [Escherichia coli O157:H7 EDL933]
          Length = 283

 Score = 31.2 bits (69), Expect = 7.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 110 FWIHARNSHHQELWILYLHPHRHPFHCHYRYHSH 9
           FW+  R    +  W+  +H H H  H H++ H H
Sbjct: 103 FWMFWRTWRGERNWLENMHEHHHHDHEHHQDHDH 136



>gi|15217714|ref|NP_174099.1|   hypothetical protein; protein id: At1g27780.1 [Arabidopsis
           thaliana]
          Length = 1468

 Score = 31.2 bits (69), Expect = 7.1
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
 Frame = +2

Query: 296 EIGVVDEHTPEDGVSALSEEVLK-----PDVKAEDNTASASATSHLNDLEAPPVEEPANG 460
           E G+V  HT  D ++    E++      P   A++    ASA++  N  E+  + EP++G
Sbjct: 717 EPGLVGTHTGADEIADADIEMVDNPSGLPSTSAQEEARDASASTEANGSESEEIYEPSDG 776

Query: 461 N 463
           +
Sbjct: 777 D 777



>gi|548843|sp|P35939|RRPP_PHODV   RNA polymerase alpha subunit (Nucleocapsid phosphoprotein)
 gi|222248|dbj|BAA01203.1|   P protein [Phocine distemper virus]
          Length = 507

 Score = 31.2 bits (69), Expect = 7.1
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +2

Query: 218 VQESREPTIRSEGECGGFISDGVVEHEI--GVVDEHTPEDGVSALSEEVLKPDVKAEDNT 391
           V   R+ T +S  E G   + GV E EI   + + HTP    +++S+ + +     EDNT
Sbjct: 32  VSNIRDQTYKSSKESG---TTGVQEEEITQNIDESHTPTKRSNSVSDVLQEDQRGREDNT 88

Query: 392 ASASATSHLND 424
           A   A   + +
Sbjct: 89  APVEAKDRIEE 99



>gi|7429151|pir||JQ1563   polymerase-associated nucleocapsid phosphoprotein - phocine
           distemper virus
 gi|440571|emb|CAA53573.1|   structural viral protein [Phocine distemper virus]
          Length = 507

 Score = 31.2 bits (69), Expect = 7.1
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +2

Query: 218 VQESREPTIRSEGECGGFISDGVVEHEI--GVVDEHTPEDGVSALSEEVLKPDVKAEDNT 391
           V   R+ T +S  E G   + GV E EI   + + HTP    +++S+ + +     EDNT
Sbjct: 32  VSNIRDQTYKSSKESG---TTGVQEEEITQNIDESHTPTKRSNSVSDVLQEDQRGREDNT 88

Query: 392 ASASATSHLND 424
           A   A   + +
Sbjct: 89  APVEAKDRIEE 99



>gi|5668789|gb|AAD46015.1|AC007894_13   F21H2.5 [Arabidopsis thaliana]
          Length = 1132

 Score = 31.2 bits (69), Expect = 7.1
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
 Frame = +2

Query: 296 EIGVVDEHTPEDGVSALSEEVLK-----PDVKAEDNTASASATSHLNDLEAPPVEEPANG 460
           E G+V  HT  D ++    E++      P   A+D    ASA++  N  ++    EP++G
Sbjct: 678 EPGLVGTHTGADEIADADIEMVDNPSGLPSTSAQDEARDASASTEANGSKSEETYEPSDG 737

Query: 461 NISPLSQE 484
           + + + +E
Sbjct: 738 DTAHVIRE 745



>gi|19856246|sp|P15205|MAPB_RAT   Microtubule-associated protein 1B (MAP 1B) (Neuraxin) [Contains: MAP1
            light chain LC1]
          Length = 2459

 Score = 30.8 bits (68), Expect = 9.2
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
 Frame = +2

Query: 218  VQESREPTIRSEGECGGFISDGVVEHEIGVVDEHTPEDGVSALSEEVLKPDVKAEDNTAS 397
            +  + EP+   + +    IS   VE        HTP    S L E+ L   V   D +  
Sbjct: 1694 IPPTEEPSYTQDNDLSELISVSQVEASPSTSSAHTPSQIASPLQEDTLSDVVPPRDMSLY 1753

Query: 398  AS-ATSHLNDLEAPPVEEPANGNISPLS 478
            AS A+  +  LE   +      +ISPL+
Sbjct: 1754 ASLASEKVQSLEGEKLS--PKSDISPLT 1779



>gi|1083716|pir||A56577   microtubule-associated protein MAP 1B - rat (fragment)
 gi|11182065|emb|CAC16162.1|   microtubule associated protein (MAP) [Rattus norvegicus]
          Length = 2364

 Score = 30.8 bits (68), Expect = 9.2
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
 Frame = +2

Query: 218  VQESREPTIRSEGECGGFISDGVVEHEIGVVDEHTPEDGVSALSEEVLKPDVKAEDNTAS 397
            +  + EP+   + +    IS   VE        HTP    S L E+ L   V   D +  
Sbjct: 1599 IPPTEEPSYTQDNDLSELISVSQVEASPSTSSAHTPSQIASPLQEDTLSDVVPPRDMSLY 1658

Query: 398  AS-ATSHLNDLEAPPVEEPANGNISPLS 478
            AS A+  +  LE   +      +ISPL+
Sbjct: 1659 ASLASEKVQSLEGEKLS--PKSDISPLT 1684



>gi|15228375|ref|NP_187692.1|   putative RING zinc finger protein; protein id: At3g10810.1
           [Arabidopsis thaliana]
 gi|6630549|gb|AAF19568.1|AC011708_11   putative RING zinc finger protein [Arabidopsis thaliana]
          Length = 684

 Score = 30.8 bits (68), Expect = 9.2
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = -2

Query: 137 NPDQPSRPHFWIHARNSHHQELWILYLHPHRHPFHCHYRYHSHPL 3
           +P     PH   H  + HH        H H H  H H+ +H H L
Sbjct: 508 SPSPSPSPHSKHHHHHHHHH-------HHHHHHHHNHHHHHHHNL 545



>gi|538622|pir||S06017   neuraxin - rat
 gi|57827|emb|CAA34620.1|   neuraxin (AA 1-863) [Rattus sp.]
          Length = 863

 Score = 30.8 bits (68), Expect = 9.2
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
 Frame = +2

Query: 218 VQESREPTIRSEGECGGFISDGVVEHEIGVVDEHTPEDGVSALSEEVLKPDVKAEDNTAS 397
           +  + EP+   + +    IS   VE        HTP    S L E+ L   V   D +  
Sbjct: 98  IPPTEEPSYTQDNDLSELISVSQVEASPSTSSAHTPSQIASPLQEDTLSDVVPPRDMSLY 157

Query: 398 AS-ATSHLNDLEAPPVEEPANGNISPLS 478
           AS A+  +  LE   +      +ISPL+
Sbjct: 158 ASLASEKVQSLEGEKLS--PKSDISPLT 183



>gi|22041133|ref|XP_087259.5|   similar to evidence:NAS~hypothetical protein~putative [Homo
           sapiens]
          Length = 251

 Score = 30.8 bits (68), Expect = 9.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 89  SHHQELWILYLHPHRHPFHCHYRYHSH 9
           SH  ++++ + HPH H  H H  +H H
Sbjct: 145 SHMHDVYMRHHHPHAHMHHRHRHHHHH 171



>gi|15791035|ref|NP_280859.1|   tRNA intron endonuclease; EndA [Halobacterium sp. NRC-1]
 gi|25410571|pir||G84371   tRNA intron endonuclease [imported] - Halobacterium sp. NRC-1
 gi|10581626|gb|AAG20339.1|   tRNA intron endonuclease; EndA [Halobacterium sp. NRC-1]
          Length = 343

 Score = 30.8 bits (68), Expect = 9.2
 Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
 Frame = +2

Query: 230 REPTIRSEGECGGFI--------SDGVVEHEIGVVDEHT--PEDGVSALSEEVL 361
           R+P  R  G+ G F+         DGVV+H + VVDE T  P DG   LSE VL
Sbjct: 91  RDPWWRDPGD-GDFVVFPRGNTRRDGVVKHRVRVVDERTTLPVDG---LSESVL 140



>gi|6958708|gb|AAF32727.1|AF138402_1   envelope glycoprotein [Human immunodeficiency virus type 1]
          Length = 200

 Score = 30.8 bits (68), Expect = 9.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 457 WKYISSFTGTTGPDNLQFSCRI 522
           WK+ S++ GTTG +N+   CRI
Sbjct: 127 WKFNSTWNGTTGNENITLPCRI 148



>gi|627071|pir||A54523   histidine-rich protein - Plasmodium lophurae (fragment)
 gi|552196|gb|AAA29616.1|   histidine-rich protein [Plasmodium lophurae]
          Length = 140

 Score = 30.8 bits (68), Expect = 9.2
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 8/47 (17%)
 Frame = -2

Query: 125 PSRPHFWIHARNSHHQELWI-------LYLHPHRHP-FHCHYRYHSH 9
           P   H   HA + HH   W         + H H HP FH H+ + +H
Sbjct: 38  PHHHHHHHHAPHHHHHHPWFHHHHHHPWFHHHHHHPWFHHHHHHDAH 84



>gi|21291077|gb|EAA03222.1|   agCP1893 [Anopheles gambiae str. PEST]
          Length = 2517

 Score = 30.8 bits (68), Expect = 9.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 89   SHHQELWILYLHPHRHPFHCHYRYHSH 9
            SHHQ+       PH HP H H+  H H
Sbjct: 2440 SHHQQQQQQQHPPHLHPHHHHHHQHHH 2466






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Dec 9, 2002  8:40 PM
  Number of letters in database: 397,579,747
  Number of sequences in database:  1,247,039
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 377,539,299
Number of Sequences: 1247039
Number of extensions: 7454467
Number of successful extensions: 25414
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 22865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24730
length of database: 397,579,747
effective HSP length: 114
effective length of database: 255,417,301
effective search space used: 15580455361
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)