BLASTX 2.2.5 [Nov-16-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1039749856-07683-22060

Query= 
         (270 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,247,039 sequences; 397,579,747 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|14029035|gb|AAK52576.1|AC079685_7  Putative peptide/amino...    33   0.70  
gi|23131978|gb|ZP_00113763.1|  hypothetical protein [Prochlo...    31   3.5   
gi|15229689|ref|NP_190587.1|  putative protein; protein id: ...    31   4.5   
gi|9366817|emb|CAB95579.1|  conserved hypothetical protein [...    31   4.5   
gi|15806010|ref|NP_294711.1|  DNA-binding response regulator...    30   5.9   
gi|23481355|gb|EAA17659.1|  Cyclin, putative [Plasmodium yoe...    30   7.7   

Alignments


>gi|14029035|gb|AAK52576.1|AC079685_7   Putative peptide/amino acid transporter [Oryza sativa]
          Length = 235

 Score = 33.5 bits (75), Expect = 0.70
 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 22/87 (25%)
 Frame = -2

Query: 248 EINRWVIDLLSYTITPTTSVDELGLHPLDVLQKSV-------------RGSPNVRR---- 120
           E+N+ V+  +S +     + +   LHPLD+ +KS+             RG     R    
Sbjct: 121 EVNKMVLRFISPSCKTPPAKEHRALHPLDLFRKSLLSGQHHRPRGDQGRGGGGAARRDDR 180

Query: 119 -----STEGSLSCMPSAAELREAGIRF 54
                  E +   + SAAEL EAGIRF
Sbjct: 181 RHDDDEEEANGGIIRSAAELYEAGIRF 207



>gi|23131978|gb|ZP_00113763.1|   hypothetical protein [Prochlorococcus marinus str. MIT 9313]
          Length = 222

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +1

Query: 13  KLTVPANPEPSLTSKRIPASRSSAAEGIQLRDPSVDLRTFGLPRTLF*RTSNGWSPNSST 192
           KL +PA P+P L  +R+PA  +  A G+     +    T  L   L      GW   S  
Sbjct: 106 KLPLPAGPDPDLWRQRVPAPLAPVAAGLAFGLAASPCTTPVLAVLL------GWIAQSGQ 159

Query: 193 DVVGVMV 213
            +VG+++
Sbjct: 160 PLVGIVL 166



>gi|15229689|ref|NP_190587.1|   putative protein; protein id: At3g50180.1 [Arabidopsis thaliana]
 gi|11357345|pir||T45564   hypothetical protein F11C1.20 - Arabidopsis thaliana
 gi|6523029|emb|CAB62297.1|   putative protein [Arabidopsis thaliana]
          Length = 588

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
 Frame = -2

Query: 206 TPTTSVDELGLHPLDVLQKSV-----RGSPNVRRSTEGSLS-CMPSAAELREAGIRFEVS 45
           +P   V    LH LDV  +S+      G  N  R  +  L   +P+  ELR+AG +F+++
Sbjct: 360 SPPRGVSNGELHCLDVFHRSLLFPRSSGKANYSRVADKHLQRVIPTVTELRDAGFKFKLN 419

Query: 44  EGSGF 30
           +   F
Sbjct: 420 KTDRF 424



>gi|9366817|emb|CAB95579.1|   conserved hypothetical protein [Trypanosoma brucei]
          Length = 1249

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 7   RSKLTVPANPEPSLTSKRIPASRSSAAEGIQL-RDPSVDLRTFGLPRT 147
           R+  ++P  P P+L+S R PA++S A+    +   PS   R+   PRT
Sbjct: 190 RTSTSIPVQPLPTLSSVRPPATKSPASSRPAIATSPSGTARSLRTPRT 237



>gi|15806010|ref|NP_294711.1|   DNA-binding response regulator [Deinococcus radiodurans]
 gi|7471836|pir||E75450   DNA-binding response regulator - Deinococcus radiodurans  (strain
           R1)
 gi|6458715|gb|AAF10563.1|AE001951_3   DNA-binding response regulator [Deinococcus radiodurans]
          Length = 239

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 21/73 (28%), Positives = 32/73 (43%)
 Frame = -2

Query: 254 HREINRWVIDLLSYTITPTTSVDELGLHPLDVLQKSVRGSPNVRRSTEGSLSCMPSAAEL 75
           H  I R V++  S   TPT   D+L    L+VL+ +  G  N  +     L   P   ++
Sbjct: 150 HPSIARKVLERFSVASTPTPPEDDLSPRELEVLRVAASGRTN--KEIARDLDISPRTVQV 207

Query: 74  REAGIRFEVSEGS 36
             A I  ++  GS
Sbjct: 208 HLANIFSKLGVGS 220



>gi|23481355|gb|EAA17659.1|   Cyclin, putative [Plasmodium yoelii yoelii]
          Length = 503

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 220 FPIPSHLPRLSMSWGSIHWTFFRKASVVVQTSEGQLKGLSAVCLPL 83
           F + +H+P + +S  S  W FF +  +     +G  K  +A CL L
Sbjct: 386 FNLVNHIPEIDISTISCAWVFFERLVIKGYVHKGNRKLYAATCLIL 431






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Dec 9, 2002  8:40 PM
  Number of letters in database: 397,579,747
  Number of sequences in database:  1,247,039
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 195,467,751
Number of Sequences: 1247039
Number of extensions: 3726758
Number of successful extensions: 11974
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11971
length of database: 397,579,747
effective HSP length: 65
effective length of database: 316,522,212
effective search space used: 7596533088
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)