BLASTX 2.2.5 [Nov-16-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1039750466-012563-25834

Query= 
         (290 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,247,039 sequences; 397,579,747 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|548493|sp|P35339|PGLT_MAIZE  EXOPOLYGALACTURONASE PRECURS...    32   1.5   
gi|944922|gb|AAC49038.1|  beta-glucosidase                         31   4.4   
gi|15890830|ref|NP_356502.1|  AGR_L_1417p [Agrobacterium tum...    30   9.8   
gi|17937841|ref|NP_534630.1|  conserved hypothetical protein...    30   9.8   

Alignments


>gi|548493|sp|P35339|PGLT_MAIZE   EXOPOLYGALACTURONASE PRECURSOR (EXOPG) (PECTINASE) (GALACTURAN
           1,4-ALPHA-GALACTURONIDASE)
 gi|629854|pir||S30067   polygalacturonase - maize
 gi|288612|emb|CAA47052.1|   polygalacturonase [Zea mays]
          Length = 410

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = +2

Query: 122 ITLKMPPCPHQLCTLREETTPGAAEACLSAMDITFSNLTGHLSMQ-----ICTRIYPC 280
           I + M  CP++LCT       GA++  ++  D+TF N+TG  S       +CT   PC
Sbjct: 320 IIIDMKYCPNKLCTAN-----GASK--VTVKDVTFKNITGTSSTPEAVNLLCTAKIPC 370



>gi|944922|gb|AAC49038.1|   beta-glucosidase
          Length = 420

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +2

Query: 20  KHRSATNTTAICYVYHMLIADCYGTGDTDYRPATITLKMPPCPHQLCTLREETT 181
           KH       A  YVY  +  D  G G+T  + AT+T  MPP      +  E+TT
Sbjct: 31  KHHQHKRAVAYEYVYVTITVD--GNGNTIEQSATLTTTMPPVSTPETSSDEDTT 82



>gi|15890830|ref|NP_356502.1|   AGR_L_1417p [Agrobacterium tumefaciens]
 gi|25379748|pir||E98220   hypothetical protein AGR_L_1417 [imported] - Agrobacterium
           tumefaciens (strain C58, Cereon)
 gi|15159119|gb|AAK89287.1|   AGR_L_1417p [Agrobacterium tumefaciens str. C58 (Cereon)]
          Length = 631

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 133 DAPVPTSTLHLTGGNDAWCRRSVPICHGYYL 225
           D P+P   LHLTGG      R +   H  YL
Sbjct: 49  DRPLPFLCLHLTGGTKNLAARDIAAAHASYL 79



>gi|17937841|ref|NP_534630.1|   conserved hypothetical protein [Agrobacterium tumefaciens str. C58
           (U. Washington)]
 gi|25379750|pir||AD3066   conserved hypothetical protein Atu4146 [imported] - Agrobacterium
           tumefaciens (strain C58, Dupont)
 gi|17742600|gb|AAL44946.1|   conserved hypothetical protein [Agrobacterium tumefaciens str. C58
           (U. Washington)]
          Length = 625

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 133 DAPVPTSTLHLTGGNDAWCRRSVPICHGYYL 225
           D P+P   LHLTGG      R +   H  YL
Sbjct: 43  DRPLPFLCLHLTGGTKNLAARDIAAAHASYL 73






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Dec 9, 2002  8:40 PM
  Number of letters in database: 397,579,747
  Number of sequences in database:  1,247,039
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 230,673,880
Number of Sequences: 1247039
Number of extensions: 4645078
Number of successful extensions: 9582
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9581
length of database: 397,579,747
effective HSP length: 72
effective length of database: 307,792,939
effective search space used: 7387030536
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)