BLASTX 2.2.5 [Nov-16-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1039752842-02257-27664

Query= 
         (238 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,247,039 sequences; 397,579,747 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17554414|ref|NP_499030.1|  PaTched Related PTR-9 (ptr-9) ...    32   1.6   
gi|25091408|sp|Q00357|TOXA_COCCA  Putative HC-toxin efflux c...    32   2.8   
gi|23485670|gb|EAA20525.1|  hypothetical protein [Plasmodium...    32   2.8   
gi|3098512|gb|AAC27701.1|  glucose permease [Corynebacterium...    31   4.7   
gi|15623988|dbj|BAB68042.1|  putative alliinase [Oryza sativ...    30   8.0   
gi|15623991|dbj|BAB68045.1|  putative alliinase [Oryza sativ...    30   8.0   

Alignments


>gi|17554414|ref|NP_499030.1|   PaTched Related PTR-9 (ptr-9) [Caenorhabditis elegans]
 gi|465915|sp|Q03602|YMB5_CAEEL   Hypothetical 47.0 kDa protein F54G8.5 in chromosome III
 gi|280547|pir||S28276   hypothetical protein F54G8.5 - Caenorhabditis elegans
 gi|3877604|emb|CAA79560.1|   C. elegans ptr-9 protein (corresponding sequence F54G8.5)
           [Caenorhabditis elegans]
          Length = 413

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = -3

Query: 200 ACSVLFNFLWCFWSSIHALMMLVCRVSLQGFPPFFCTYESSGFPRESHMRSNRSFF 33
           A ++LF FL+   +  +A+M L CR  + G  P FC YE +  P E+ +   +S F
Sbjct: 53  AMAILFMFLFQV-TFFNAVMSLCCRREVSGKHPVFCCYEITP-PEETQVLEKQSNF 106



>gi|25091408|sp|Q00357|TOXA_COCCA   Putative HC-toxin efflux carrier TOXA
 gi|1063421|gb|AAB36607.1|   toxin pump
          Length = 548

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 173 WCFWSSIHALMMLVCRVSLQGFPPFFCTYESSGFPR 66
           WCFW ++  +   VC + L  F P   TY +SG PR
Sbjct: 204 WCFWINL-PIGAAVCAILLFFFHPPRSTYSASGVPR 238



>gi|23485670|gb|EAA20525.1|   hypothetical protein [Plasmodium yoelii yoelii]
          Length = 3623

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +1

Query: 73   KPLDSYVQKNGGNPCRLTRQTSIISAWILDQKHHKKLKRTEQASNQPASTSTYIL 237
            KP  +   +N  N   LT+ +SI+S    D   H KL+ +  ASN+    + YI+
Sbjct: 908  KPTKNIDTQNNNNDILLTQDSSILST---DSDGHSKLRNSYCASNEEGYKNNYII 959



>gi|3098512|gb|AAC27701.1|   glucose permease [Corynebacterium ammoniagenes]
          Length = 661

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 10/61 (16%)
 Frame = -1

Query: 187 SLISYG--VFGPVSMH**CLFAGSVYRGFHRF---SVHTNQVVFL-----VKVTCVLIGP 38
           +L  YG  VF P+ M    L A  +Y+GF +    +VH   V FL     + +T VLIGP
Sbjct: 233 ALPDYGGNVFVPLIM---ALVAAGIYKGFQKIIPSAVHMVFVPFLTLLFTIPITAVLIGP 289

Query: 37  F 35
           F
Sbjct: 290 F 290



>gi|15623988|dbj|BAB68042.1|   putative alliinase [Oryza sativa (japonica cultivar-group)]
 gi|20160894|dbj|BAB89832.1|   putative alliinase [Oryza sativa (japonica cultivar-group)]
          Length = 485

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 164 WSSIHALMMLVCRVSLQGFPPFFCTY 87
           W  ++A++    R+SLQ  PP +CTY
Sbjct: 375 WRRLNAVVSRSTRISLQKMPPQYCTY 400



>gi|15623991|dbj|BAB68045.1|   putative alliinase [Oryza sativa (japonica cultivar-group)]
 gi|20160897|dbj|BAB89835.1|   putative alliinase [Oryza sativa (japonica cultivar-group)]
          Length = 484

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 164 WSSIHALMMLVCRVSLQGFPPFFCTY 87
           W  ++A++    R+SLQ  PP +CTY
Sbjct: 374 WRRLNAVVSRSTRISLQKIPPQYCTY 399






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Dec 9, 2002  8:40 PM
  Number of letters in database: 397,579,747
  Number of sequences in database:  1,247,039
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 180,381,215
Number of Sequences: 1247039
Number of extensions: 3233423
Number of successful extensions: 7893
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7891
length of database: 397,579,747
effective HSP length: 54
effective length of database: 330,239,641
effective search space used: 7925751384
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)