BLASTX 2.2.5 [Nov-16-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1039753453-07294-4915

Query= 
         (396 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,247,039 sequences; 397,579,747 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|25044761|ref|XP_196551.1|  hypothetical protein XP_196551...    51   4e-06 
gi|482769|pir||A61144  probable flagellar protein (clone FCH...    37   0.069 
gi|15807207|ref|NP_295936.1|  conserved hypothetical protein...    32   2.2   
gi|23488487|gb|EAA21331.1|  hypothetical protein [Plasmodium...    29   4.5   
gi|13242734|ref|NP_077398.1|  protease [Bovine adenovirus D]...    30   8.4   
gi|12847085|dbj|BAB27431.1|  data source:MGD, source key:MGI...    30   8.4   
gi|18079354|ref|NP_542374.1|  cask-interacting protein 2 [Mu...    30   8.4   
gi|7305615|ref|NP_038947.1|  ubiquitin-specific protease 21;...    30   8.4   

Alignments


>gi|25044761|ref|XP_196551.1|   hypothetical protein XP_196551 [Mus musculus]
          Length = 102

 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 25/30 (83%), Positives = 25/30 (83%)
 Frame = +2

Query: 284 LPHPRKAAGAQITQS*HGEVVTINNNTGRF 373
           LPHPRKAAGAQIT S  GEVVT NNNTG F
Sbjct: 63  LPHPRKAAGAQITHSRPGEVVTKNNNTGLF 92



>gi|482769|pir||A61144   probable flagellar protein (clone FCH-F8-4) - Trypanosoma cruzi
           (fragment)
          Length = 19

 Score = 36.6 bits (83), Expect = 0.069
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = -1

Query: 303 AFLGCGSRFSGSLSGIEP 250
           AFLGC SRFSGS SG+EP
Sbjct: 2   AFLGCSSRFSGSFSGVEP 19



>gi|15807207|ref|NP_295936.1|   conserved hypothetical protein [Deinococcus radiodurans]
 gi|7471591|pir||F75301   conserved hypothetical protein - Deinococcus radiodurans  (strain
           R1)
 gi|6460015|gb|AAF11760.1|AE002054_5   conserved hypothetical protein [Deinococcus radiodurans]
          Length = 371

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 68  RGAFIR*KA*RWAPPADPMIHDNSTDRTALVPA 166
           RG F    A  W PPA P +  +  D+TAL+PA
Sbjct: 216 RGRFAFTPAPDWCPPALPAVTGSGADKTALLPA 248



>gi|23488487|gb|EAA21331.1|   hypothetical protein [Plasmodium yoelii yoelii]
          Length = 105

 Score = 28.9 bits (63), Expect(2) = 4.5
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -2

Query: 296 LDVVAVSQAXXXXXXXXXXXPVTTMVGPYPTIES 195
           LDVVA+SQA           PV  M+G YP I+S
Sbjct: 72  LDVVAISQAPSPESNSNSPLPVKAMLGQYPNIKS 105




 Score = 20.8 bits (42), Expect(2) = 4.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 367 PGIVIYCHYL 338
           P IVI CHYL
Sbjct: 58  PYIVISCHYL 67



>gi|13242734|ref|NP_077398.1|   protease [Bovine adenovirus D]
 gi|13129572|gb|AAC41021.2|   protease [bovine adenovirus 4]
          Length = 201

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -2

Query: 185 RNLNDASPARGPCDPSSYHESSD 117
           ++LN ASP+  P DPSS H++ D
Sbjct: 147 QSLNGASPSLTPSDPSSLHKNQD 169



>gi|12847085|dbj|BAB27431.1|   data source:MGD, source key:MGI:1353665,
           evidence:ISS~putative~ubiquitin specific protease 23
           [Mus musculus]
          Length = 569

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -3

Query: 163 RHEGRAIRRVIMNHRISGRSPASSLLSNKCAPPGSRGLLHXISSR 29
           R E   +RR     R+ G     +LLS +  PP S G  H IS+R
Sbjct: 145 RPEPPTLRRSTSLRRLGGFPGPPTLLSIRTEPPTSHGSFHMISAR 189



>gi|18079354|ref|NP_542374.1|   cask-interacting protein 2 [Mus musculus]
 gi|17940760|gb|AAL49759.1|AF451978_1   cask-interacting protein 2 [Mus musculus]
          Length = 1201

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 158  RGPCDPSSYHESSDQRAEPSVKP 90
            + PCDP S   +  QR+EPSV P
Sbjct: 1021 QAPCDPPSASSNPPQRSEPSVLP 1043



>gi|7305615|ref|NP_038947.1|   ubiquitin-specific protease 21; ubiquitin specific protease 23; EST
           W53272 [Mus musculus]
 gi|10720332|sp|Q9QZL6|UBPL_MOUSE   Ubiquitin carboxyl-terminal hydrolase 21 (Ubiquitin thiolesterase
           21) (Ubiquitin-specific processing protease 21)
           (Deubiquitinating enzyme 21)
 gi|5853115|gb|AAD54322.1|AF177759_1   ubiquitin specific protease 16 [Mus musculus]
 gi|18257320|gb|AAH21903.1|   ubiquitin specific protease 23 [Mus musculus]
          Length = 566

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -3

Query: 163 RHEGRAIRRVIMNHRISGRSPASSLLSNKCAPPGSRGLLHXISSR 29
           R E   +RR     R+ G     +LLS +  PP S G  H IS+R
Sbjct: 145 RPEPPTLRRSTSLRRLGGFPGPPTLLSIRTEPPTSHGSFHMISAR 189






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Dec 9, 2002  8:40 PM
  Number of letters in database: 397,579,747
  Number of sequences in database:  1,247,039
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 292,161,585
Number of Sequences: 1247039
Number of extensions: 5668637
Number of successful extensions: 12659
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 12415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12659
length of database: 397,579,747
effective HSP length: 107
effective length of database: 264,146,574
effective search space used: 6339517776
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)