BLASTX 2.2.5 [Nov-16-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1039725406-023673-12484

Query= 
         (420 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,247,039 sequences; 397,579,747 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|16930529|gb|AAL31950.1|  CDH1-D [Gallus gallus]                 70   2e-22 
gi|23480590|gb|EAA17111.1|  hypothetical protein [Plasmodium...    40   6e-09 
gi|20849968|ref|XP_151126.1|  hypothetical protein XP_151126...    54   3e-07 
gi|25032350|ref|XP_195981.1|  hypothetical protein XP_195981...    54   3e-07 
gi|20915805|ref|XP_159532.1|  hypothetical protein XP_159532...    54   3e-07 
gi|25031628|ref|XP_195928.1|  hypothetical protein XP_195928...    50   6e-06 
gi|23479822|gb|EAA16551.1|  hypothetical protein [Plasmodium...    38   0.030 
gi|6274552|ref|NP_009330.1|  signal transducer and activator...    32   2.1   
gi|422969|pir||A46159  interferon-dependent positive-acting ...    32   2.1   
gi|129074|sp|P21258|OGL_ERWCH  OLIGOGALACTURONATE LYASE >gi|...    31   2.8   
gi|7517337|pir||B72581  hypothetical protein APES063 - Aerop...    30   4.7   
gi|23482833|gb|EAA18699.1|  hypothetical protein [Plasmodium...    30   6.2   

Alignments


>gi|16930529|gb|AAL31950.1|   CDH1-D [Gallus gallus]
          Length = 451

 Score = 69.7 bits (169), Expect(2) = 2e-22
 Identities = 44/81 (54%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
 Frame = +3

Query: 162 CSARAAQNI*GHHRPVIASNFRGLNGHSPSKKLAAEGWL-RIAS*QAEVSFVNGINQTNR 338
           CS R +Q   G  RPVIA + R    H   K++       R+ S  A VSFV GINQTNR
Sbjct: 365 CSPRTSQ---GRDRPVIAQS-RVAERHLSLKEVGRRPLGGRVTSKHARVSFVIGINQTNR 420

Query: 339 STN*ERPCTTTHRIKKELSVC 401
           STN ERPCTTTH I+KELS C
Sbjct: 421 STNKERPCTTTHGIEKELSTC 441




 Score = 55.5 bits (132), Expect(2) = 2e-22
 Identities = 32/60 (53%), Positives = 36/60 (60%)
 Frame = +2

Query: 2   QRTGM*STRADDSRLLGIPR*RPTIAMIYPHHDEISQDYPGLSAKAIYSLNTSV*RACGP 181
           QR G  STRA D  LLGIPR    IA+  PHH+  S  YP L AK  + L+ SV RAC P
Sbjct: 308 QRAGTYSTRAYDPHLLGIPRSWGIIAIPDPHHEWGSTGYPRLPAKGTHKLSQSVQRACSP 367



>gi|23480590|gb|EAA17111.1|   hypothetical protein [Plasmodium yoelii yoelii]
          Length = 402

 Score = 39.7 bits (91), Expect(3) = 6e-09
 Identities = 15/21 (71%), Positives = 20/21 (95%)
 Frame = +2

Query: 338 LHQLRTAMHHHP*NQERALSL 400
           +H+L+TAMHHHP NQERA++L
Sbjct: 177 IHELKTAMHHHPRNQERAINL 197




 Score = 36.6 bits (83), Expect(3) = 6e-09
 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +1

Query: 52  HSSLKTNNCNDLSPSR*NFPRLPGPVGQGYILVEYI----SVARVRPRTSKGITDLL 210
           HSS K NNCN+LSPSR             Y+L++       VARV+P  +K  T LL
Sbjct: 87  HSSFKINNCNNLSPSR-------------YVLIKITFTISVVARVQPTLNKVDTSLL 130




 Score = 22.7 bits (47), Expect(3) = 6e-09
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +3

Query: 300 EVSFVNGINQTN 335
           ++SFV GINQTN
Sbjct: 164 KISFVIGINQTN 175



>gi|20849968|ref|XP_151126.1|   hypothetical protein XP_151126 [Mus musculus]
          Length = 136

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 25/29 (86%), Positives = 25/29 (86%)
 Frame = +1

Query: 331 QIAPPTKNGHAPPPIESRKSSQSVNPCYV 417
           QIAPPTKNGHAPPP ESRKS QSVNP  V
Sbjct: 13  QIAPPTKNGHAPPPTESRKSYQSVNPVRV 41



>gi|25032350|ref|XP_195981.1|   hypothetical protein XP_195981 [Mus musculus]
 gi|25046121|ref|XP_195957.1|   hypothetical protein XP_195957 [Mus musculus]
          Length = 44

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 25/29 (86%), Positives = 25/29 (86%)
 Frame = +1

Query: 331 QIAPPTKNGHAPPPIESRKSSQSVNPCYV 417
           QIAPPTKNGHAPPP ESRKS QSVNP  V
Sbjct: 13  QIAPPTKNGHAPPPTESRKSYQSVNPVRV 41



>gi|20915805|ref|XP_159532.1|   hypothetical protein XP_159532 [Mus musculus]
          Length = 98

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 25/29 (86%), Positives = 25/29 (86%)
 Frame = +1

Query: 331 QIAPPTKNGHAPPPIESRKSSQSVNPCYV 417
           QIAPPTKNGHAPPP ESRKS QSVNP  V
Sbjct: 13  QIAPPTKNGHAPPPTESRKSYQSVNPVRV 41



>gi|25031628|ref|XP_195928.1|   hypothetical protein XP_195928 [Mus musculus]
          Length = 44

 Score = 50.1 bits (118), Expect = 6e-06
 Identities = 23/29 (79%), Positives = 24/29 (82%)
 Frame = +1

Query: 331 QIAPPTKNGHAPPPIESRKSSQSVNPCYV 417
           QIAPP+KNGHAPPP E RKS QSVNP  V
Sbjct: 13  QIAPPSKNGHAPPPTEWRKSYQSVNPVRV 41



>gi|23479822|gb|EAA16551.1|   hypothetical protein [Plasmodium yoelii yoelii]
          Length = 115

 Score = 37.7 bits (86), Expect = 0.030
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = +1

Query: 43 LTRHSSLKTNNCNDLSPSR 99
          LTRHSS K NNCN+LSPSR
Sbjct: 2  LTRHSSFKINNCNNLSPSR 20



>gi|6274552|ref|NP_009330.1|   signal transducer and activator of transcription 1 isoform alpha;
           signal transducer and activator of transcription-1;
           signal transducer and activator of transcription 1,
           91kD; transcription factor ISGF-3; transcription factor
           ISGF-3 components p91/p84 [Homo sapiens]
 gi|2507413|sp|P42224|STA1_HUMAN   Signal transducer and activator of transcription 1-alpha/beta
           (Transcription factor ISGF-3 components p91/p84)
 gi|2281071|gb|AAB64012.1|   transcription factor ISGF-3 [Homo sapiens]
          Length = 750

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = +1

Query: 115 LPGPVGQGYILVEYISVARVRPRTSKGITDLLLPQT 222
           L GP G GYI  E ISV+ V P   +  TD LLP +
Sbjct: 693 LDGPKGTGYIKTELISVSEVHPSRLQ-TTDNLLPMS 727



>gi|422969|pir||A46159   interferon-dependent positive-acting transcription factor ISGF-3
           91K chain - human
          Length = 739

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = +1

Query: 115 LPGPVGQGYILVEYISVARVRPRTSKGITDLLLPQT 222
           L GP G GYI  E ISV+ V P   +  TD LLP +
Sbjct: 682 LDGPKGTGYIKTELISVSEVHPSRLQ-TTDNLLPMS 716



>gi|129074|sp|P21258|OGL_ERWCH   OLIGOGALACTURONATE LYASE
 gi|78268|pir||JQ0189   oligogalacturonide lyase (EC 4.2.2.6) - Erwinia chrysanthemi
 gi|148426|gb|AAA24825.1|   oligogalacturonate lysase (ogl)
          Length = 388

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 21/66 (31%), Positives = 30/66 (45%)
 Frame = +3

Query: 216 SNFRGLNGHSPSKKLAAEGWLRIAS*QAEVSFVNGINQTNRSTN*ERPCTTTHRIKKELS 395
           SN R +  H+P +    E W+   S  A VS++ G   TNR      P T  +R   E+ 
Sbjct: 226 SNMRKVKEHAPGESCTHEFWVPNGSALAYVSYLKG--STNRFICSVDPVTLENRQLTEMP 283

Query: 396 VCQSLL 413
            C  L+
Sbjct: 284 PCSHLM 289



>gi|7517337|pir||B72581   hypothetical protein APES063 - Aeropyrum pernix (strain K1)
 gi|5105622|dbj|BAA80935.1|   64aa long hypothetical protein [Aeropyrum pernix]
          Length = 64

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = -2

Query: 89  DRSLQLLVFNEECLVSASHQLALTTSL 9
           DR LQL + N E LV+A H  A+ TSL
Sbjct: 23  DRGLQLALVNVESLVTARHHRAVNTSL 49



>gi|23482833|gb|EAA18699.1|   hypothetical protein [Plasmodium yoelii yoelii]
          Length = 78

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -2

Query: 335 ICLVNSVNERDLSLLTS 285
           ICLVNS NERDL+LL S
Sbjct: 2   ICLVNSDNERDLNLLIS 18






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Dec 9, 2002  8:40 PM
  Number of letters in database: 397,579,747
  Number of sequences in database:  1,247,039
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 300,766,433
Number of Sequences: 1247039
Number of extensions: 5637668
Number of successful extensions: 11544
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 11315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11544
length of database: 397,579,747
effective HSP length: 115
effective length of database: 254,170,262
effective search space used: 6100086288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)